RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GAFA1Q96PS6 74 aa8.78□□□□□ -1
CUX1-221ENST00000622516 HSD17B10Q99714 261 aaKnown RBP8.78□□□□□ -1
CUX1-221ENST00000622516 OR51M1Q9H341 326 aa8.78□□□□□ -1
CUX1-221ENST00000622516 ZNF665Q9H7R5 613 aa8.78□□□□□ -1
CUX1-221ENST00000622516 PLXNB1O43157 2135 aa8.78□□□□□ -1
CUX1-221ENST00000622516 TANC2Q9HCD6 1990 aa8.78□□□□□ -1
CUX1-221ENST00000622516 K7ENP7 123 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 RPS23P62266 143 aaKnown RBP8.77□□□□□ -1.01
CUX1-221ENST00000622516 SOHLH1Q5JUK2 328 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 TMEM14EPQ6UXP3 125 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 ZNF66Q6ZN08 573 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 TCF23Q7RTU1 214 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 CYB561D1Q8N8Q1 229 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 TOLLIPQ9H0E2 274 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 TRGV8A0A0C4DH27 118 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 IGKV1D-33P01593 117 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 IGKV1-33P01594 117 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 CRYBA1P05813 215 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 MYOD1P15172 320 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 RAB2AP61019 212 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 TLE4Q04727 773 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 TFF3Q07654 80 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 LRRC75BQ2VPJ9 315 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 STUMQ69YW2 141 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 C1orf122Q6ZSJ8 110 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 COMMD1Q8N668 190 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 CA5BP1Q8WTZ4 195 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 WDR61Q9GZS3 305 aaKnown RBP8.77□□□□□ -1.01
CUX1-221ENST00000622516 JPT1Q9UK76 154 aa8.77□□□□□ -1.01
CUX1-221ENST00000622516 SAA2-SAA4A0A096LPE2 208 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 PIGBOS1A0A0B4J2F0 54 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 A0A1W2PPE2 198 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 YPEL1O60688 119 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 OPN1MWP04001 364 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 S100A8P05109 93 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 SAA2P0DJI9 122 aaPredicted RBP8.76□□□□□ -1.01
CUX1-221ENST00000622516 OPN1MW2P0DN77 364 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 OPN1MW3P0DN78 364 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 IRF2P14316 349 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 TNFSF4P23510 183 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 GATA4P43694 442 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 PRAMEF5Q5TYX0 476 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 KDF1Q8NAX2 398 aaPredicted RBP8.76□□□□□ -1.01
CUX1-221ENST00000622516 TAF15Q92804 592 aaKnown RBP eCLIP8.76□□□□□ -1.01
CUX1-221ENST00000622516 YPEL2Q96QA6 119 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 GPR61Q9BZJ8 451 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 OR6C3Q9NZP0 311 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 MIOXQ9UGB7 285 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 HRNRQ86YZ3 2850 aaPredicted RBP8.76□□□□□ -1.01
CUX1-221ENST00000622516 TRGV10A0A0A0MS01 117 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 KBTBD11-OT1A0A1B0GTJ5 212 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 COL8A2P25067 703 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 ICAM4Q14773 271 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 ZNF561Q8N587 486 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 RCC1LQ96I51 464 aaKnown RBP8.76□□□□□ -1.01
CUX1-221ENST00000622516 S1PR3Q99500 378 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 NEU1Q99519 415 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 TMPRSS5Q9H3S3 457 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 RAXQ9Y2V3 346 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 ZNF729A6NN14 1252 aaPredicted RBP8.76□□□□□ -1.01
CUX1-221ENST00000622516 F2RL2O00254 374 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 RAB29O14966 203 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 CGB3P0DN86 165 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 CGB7P0DN87 165 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 TAS2R60P59551 318 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 TRAT1Q6PIZ9 186 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 LFNGQ8NES3 379 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 CLDND2Q8NHS1 167 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 KIAA1456Q9P272 454 aa8.76□□□□□ -1.01
CUX1-221ENST00000622516 ABCA1O95477 2261 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 MALRD1Q5VYJ5 2156 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 COLCA2A8K830 154 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 C17orf100A8MU93 164 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 ZNF727A8MUV8 499 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 FAM90A26D6RGX4 464 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 SCAF4O95104 1147 aaKnown RBP8.75□□□□□ -1.01
CUX1-221ENST00000622516 CCL3L1P16619 93 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 GRNP28799 593 aaKnown RBP8.75□□□□□ -1.01
CUX1-221ENST00000622516 ZNF787Q6DD87 383 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 ACSM6Q6P461 480 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 ABHD12Q8N2K0 398 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 OR10P1Q8NGE3 313 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 OR4A16Q8NH70 328 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 RND1Q92730 232 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 GFOD1Q9NXC2 390 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 ITPR1Q14643 2758 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 A0A1W2PPH5 198 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 PMS2P5A8MQ11 134 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 FCN3O75636 299 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 SRP19P09132 144 aaKnown RBP8.75□□□□□ -1.01
CUX1-221ENST00000622516 FGF7P21781 194 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 RAB4BP61018 213 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 PAX5Q02548 391 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 PRB3Q04118 309 aaPredicted RBP8.75□□□□□ -1.01
CUX1-221ENST00000622516 CR1LQ2VPA4 569 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 SAPCD1Q5SSQ6 148 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 ZNF788Q6ZQV5 615 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 RPP25LQ8N5L8 163 aaKnown RBP8.75□□□□□ -1.01
CUX1-221ENST00000622516 LINC01560Q8TB33 94 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 FAM222BQ8WU58 562 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms