RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	HSD17B10	Q99714	261 aa	Known RBP	10.17	□□□□□ -0.78
UPF1-208	ENST00000600012	MRPL20	Q9BYC9	149 aa	Known RBP	10.17	□□□□□ -0.78
UPF1-208	ENST00000600012	TMEM222	Q9H0R3	208 aa		10.17	□□□□□ -0.78
UPF1-208	ENST00000600012	SHPK	Q9UHJ6	478 aa		10.17	□□□□□ -0.78
UPF1-208	ENST00000600012	PLXNB1	O43157	2135 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	DBX1	A6NMT0	343 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	ODF3B	A8MYP8	253 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	BUB1B-PAK6	H3BSN5	160 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	RAMP3	O60896	148 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	PFDN1	O60925	122 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	HOXB5	P09067	269 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	ZNF137P	P52743	207 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	CD83	Q01151	205 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	ZNF816	Q0VGE8	651 aa	Predicted RBP	10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	LDLRAD2	Q5SZI1	272 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	TMEM268	Q5VZI3	342 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	SELENOH	Q8IZQ5	122 aa	Known RBP	10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	SPAG16	Q8N0X2	631 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	LGI3	Q8N145	548 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	ZNF383	Q8NA42	475 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	OR11H6	Q8NGC7	330 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	ST6GALNAC6	Q969X2	333 aa		10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	10.16	□□□□□ -0.78
UPF1-208	ENST00000600012	FCGR3B	O75015	233 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	CCNK	O75909	580 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	IGKV1-39	P01597	117 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	IGKV1D-39	P04432	117 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	CT45A6	P0DMU7	189 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	CT45A5	P0DMU8	189 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	CT45A7	P0DMV0	189 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	SAA4	P35542	130 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	LPAR6	P43657	344 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	THBS3	P49746	956 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	BRWD1-AS2	P59051	145 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	ZNF585B	Q52M93	769 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	FAM71F2	Q6NXP2	309 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	LYZL2	Q7Z4W2	148 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	LHFPL4	Q7Z7J7	247 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	TGIF2LX	Q8IUE1	241 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	ZNF695	Q8IW36	515 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	SLC35G3	Q8N808	338 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	LRTM2	Q8N967	370 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	OR5M8	Q8NGP6	311 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	DDB2	Q92466	427 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	WDR89	Q96FK6	387 aa	Predicted RBP	10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	TMEM56	Q96MV1	263 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	NEURL2	Q9BR09	285 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	TMEM56-RWDD3	S4R434	201 aa		10.15	□□□□□ -0.78
UPF1-208	ENST00000600012	MPTX1	A8MV57	137 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	FAM25E	A8MYX2	175 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	B3GALNT1	O75752	331 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	S1PR2	O95136	353 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	CDS2	O95674	445 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	SERPINE2	P07093	398 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	HTR1D	P28221	377 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	UBE2E1	P51965	193 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	H2BFS	P57053	126 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	SRPX	P78539	464 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	TPTE2P1	Q5T6R2	138 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	RBPMS	Q93062	196 aa	Known RBP	10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	ADTRP	Q96IZ2	230 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	ST6GAL2	Q96JF0	529 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	FYTTD1	Q96QD9	318 aa	Known RBP	10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	NABP2	Q9BQ15	211 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	ZNF436	Q9C0F3	470 aa	Predicted RBP	10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	RANGRF	Q9HD47	186 aa	Predicted RBP	10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	RAB18	Q9NP72	206 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	PRELID3B	Q9Y3B1	194 aa		10.14	□□□□□ -0.79
UPF1-208	ENST00000600012	C13orf42	A0A1B0GVH6	325 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	C5orf51	A6NDU8	294 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	LY6L	H3BQJ8	138 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	RPA2	P15927	270 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	PAX6	P26367	422 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	GGNBP1	Q5YKI7	109 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	IL22RA2	Q969J5	263 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	RPE	Q96AT9	228 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	SLC35D1	Q9NTN3	355 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	DPM3	Q9P2X0	92 aa		10.13	□□□□□ -0.79
UPF1-208	ENST00000600012	NOTCH3	Q9UM47	2321 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	IGHV3-72	A0A0B4J1Y9	119 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012		A0A0G2JRQ6	117 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	LEUTX	A8MZ59	168 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012		H0YJW9	148 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	SMLR1	H3BR10	107 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012		H3BUX3	64 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	IGKV1-5	P01602	117 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	APOA2	P02652	100 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	OPN1MW	P04001	364 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	GAPDH	P04406	335 aa	Known RBP	10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	OPN1MW2	P0DN77	364 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	OPN1MW3	P0DN78	364 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	HLA-G	P17693	338 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	KIR2DS2	P43631	304 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	AKR1C2	P52895	323 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	BEAN1	Q3B7T3	259 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	FBLN7	Q53RD9	439 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	GSG1L	Q6UXU4	331 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	TCTEX1D1	Q8N7M0	179 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	OR4C13	Q8NGP0	309 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	OR4S2	Q8NH73	311 aa		10.12	□□□□□ -0.79

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