RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 OR5B21A6NL26 309 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 PEX7O00628 323 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 MRPS14O60783 128 aaKnown RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 EEDO75530 441 aaKnown RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 CLIC3O95833 236 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 IGLV2-23P01705 113 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 APOA2P02652 100 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TTRP02766 147 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 APODP05090 189 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 FABP3P05413 133 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR5AL1P0C617 328 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR5G3P0C626 314 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 CT45A6P0DMU7 189 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 CT45A5P0DMU8 189 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 CT45A7P0DMV0 189 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 HLA-EP13747 358 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 ORM2P19652 201 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 RAB3BP20337 219 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 EVI2AP22794 236 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 RPS3P23396 243 aaKnown RBP eCLIP2.78□□□□□ -1.96
NUP88-208ENST00000574087 ETV6P41212 452 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 GABRA2P47869 451 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 REG1BP48304 166 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 UBE2E1P51965 193 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 RAB38P57729 211 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 GABARAPL2P60520 117 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 PPP1CBP62140 327 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 DCDP81605 110 aaKnown RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 IFITM3Q01628 133 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 SP4Q02446 784 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 RPL18AQ02543 176 aaKnown RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 REG3AQ06141 175 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 HTR4Q13639 388 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 RGNQ15493 299 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TMEM183BQ1AE95 376 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TMEM241Q24JQ0 296 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 CT45A1Q5HYN5 189 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 LDLRAD2Q5SZI1 272 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR10K2Q6IF99 312 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TMEM183AQ8IXX5 376 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 DEFB107AQ8IZN7 70 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR5A1Q8NGJ0 315 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR5AR1Q8NGP9 310 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR13C8Q8NGS7 320 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR5W2Q8NH69 310 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 CT45A3Q8NHU0 189 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 ZNF418Q8TF45 676 aaPredicted RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 THEM6Q8WUY1 208 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TMEM159Q96B96 161 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 UBE2E2Q96LR5 201 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 SCGB3A2Q96PL1 93 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 RNF157Q96PX1 679 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TP53RKQ96S44 253 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 PSMG3Q9BT73 122 aaPredicted RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 SUCNR1Q9BXA5 334 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TMEM59Q9BXS4 323 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 REG4Q9BYZ8 158 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 NKX6-2Q9C056 277 aaPredicted RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 FBXL15Q9H469 300 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 POPDC3Q9HBV1 291 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 CISHQ9NSE2 258 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 LYRM2Q9NU23 88 aaPredicted RBP2.78□□□□□ -1.96
NUP88-208ENST00000574087 CALYQ9NYX4 217 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TMEM216Q9P0N5 145 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 XCL2Q9UBD3 114 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 MMP17Q9ULZ9 603 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 LAMTOR2Q9Y2Q5 125 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 POLR1DQ9Y2S0 133 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 OR51B2Q9Y5P1 312 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 HEBP2Q9Y5Z4 205 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 ZNF780BQ9Y6R6 833 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 PIK3C2AO00443 1686 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 MYO10Q9HD67 2058 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 ZFYVE16Q7Z3T8 1539 aa2.78□□□□□ -1.97
NUP88-208ENST00000574087 C1orf167Q5SNV9 1468 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 SCN4AP35499 1836 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 PHLPP1O60346 1717 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 IGKV2-28A0A075B6P5 120 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 A0A087X0T9 212 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 IFITM5A6NNB3 132 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 C1orf196B1AJZ1 125 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 J3KT08 172 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 K7EMT4 169 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 IGKV2D-28P01615 120 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 FGF1P05230 155 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 IL3P08700 152 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 GKN3PP0CG01 181 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 CD99P14209 185 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 GABRG2P18507 467 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 CSRP1P21291 193 aaKnown RBP2.77□□□□□ -1.97
NUP88-208ENST00000574087 BLVRBP30043 206 aaPredicted RBP2.77□□□□□ -1.97
NUP88-208ENST00000574087 CXCL5P42830 114 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 GALR1P47211 349 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 OR12D2P58182 307 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 PSG9Q00887 426 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 HIST1H1AQ02539 215 aaPredicted RBP2.77□□□□□ -1.97
NUP88-208ENST00000574087 EIF4EBP1Q13541 118 aaPredicted RBP2.77□□□□□ -1.97
NUP88-208ENST00000574087 IAH1Q2TAA2 248 aaPredicted RBP2.77□□□□□ -1.97
NUP88-208ENST00000574087 ZNF404Q494X3 552 aa2.77□□□□□ -1.97
NUP88-208ENST00000574087 TPTE2P1Q5T6R2 138 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms