RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RPL30P62888 115 aaKnown RBP6.52□□□□□ -1.37
VPS39-213ENST00000570062 ATP6V1FQ16864 119 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 PDLIM3Q53GG5 364 aaPredicted RBP6.52□□□□□ -1.37
VPS39-213ENST00000570062 CLLU1Q5K131 121 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 CCDC144NLQ6NUI1 221 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 BTNL3Q6UXE8 466 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 TGIF2LXQ8IUE1 241 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 FOXRED2Q8IWF2 684 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 UBAC2Q8NBM4 344 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 OR5AN1Q8NGI8 311 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 OR4C13Q8NGP0 309 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 IGFBPL1Q8WX77 278 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 LHX4Q969G2 390 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 R3HDM4Q96D70 268 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 ZNF251Q9BRH9 671 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 SLC35D1Q9NTN3 355 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 OR5AC2Q9NZP5 309 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 HSPB7Q9UBY9 170 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 CACNG5Q9UF02 275 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 PRNDQ9UKY0 176 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 POLR3KQ9Y2Y1 108 aaPredicted RBP6.52□□□□□ -1.37
VPS39-213ENST00000570062 ANKHD1Q8IWZ3 2542 aaKnown RBP6.52□□□□□ -1.37
VPS39-213ENST00000570062 COL6A6A6NMZ7 2263 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 CADP27708 2225 aa6.52□□□□□ -1.37
VPS39-213ENST00000570062 LINC00473A8K010 186 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 NUDT19A8MXV4 375 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 LEUTXA8MZ59 168 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 IGKV1-39P01597 117 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 IGLV1-47P01700 117 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 IGKV1D-39P04432 117 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 P0C879 139 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 S100A1P23297 94 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 GNG10P50151 68 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 RAB5CP51148 216 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 CAV2P51636 162 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 UBE2KP61086 200 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 POLR2GP62487 172 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS39-213ENST00000570062 TNFRSF9Q07011 255 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 ZNF816Q0VGE8 651 aaPredicted RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 TMEM177Q53S58 311 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 CXorf66Q5JRM2 361 aaPredicted RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 AVPI1Q5T686 147 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 MINOS1Q5TGZ0 78 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 ODF3L1Q8IXM7 274 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 PUSL1Q8N0Z8 303 aaKnown RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 OR8H3Q8N146 312 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 OR11H6Q8NGC7 330 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 RNF141Q8WVD5 230 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 ST8SIA2Q92186 375 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 FAM168AQ92567 244 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 ST6GALNAC6Q969X2 333 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 FLYWCH2Q96CP2 140 aaKnown RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 GNPNAT1Q96EK6 184 aaPredicted RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 TSNAXQ99598 290 aaKnown RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 HIPK2Q9H2X6 1198 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 ENY2Q9NPA8 101 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 BET1LQ9NYM9 111 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 RCL1Q9Y2P8 373 aaKnown RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 ZNF257Q9Y2Q1 563 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 WASHC3Q9Y3C0 194 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 MINOS1-NBL1R4GNA1 71 aa6.51□□□□□ -1.37
VPS39-213ENST00000570062 UTP20O75691 2785 aaKnown RBP6.51□□□□□ -1.37
VPS39-213ENST00000570062 IGHV2-26A0A0B4J1V2 119 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 A0A1W2PPR1 153 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 BUB1B-PAK6H3BSN5 160 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 SSSCA1O60232 199 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 RAMP3O60896 148 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 PROP1O75360 226 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 S1PR2O95136 353 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 IFNA5P01569 189 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 IFNA17P01571 189 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 IGHV2-5P01817 119 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 SEC11BP0C7V7 166 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 CT45A6P0DMU7 189 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 CT45A5P0DMU8 189 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 CT45A7P0DMV0 189 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 SLC25A16P16260 332 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 GATA3P23771 443 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 HTR1DP28221 377 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 G6PCP35575 357 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 SULT1A1P50225 295 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 EXOSC2Q13868 293 aaKnown RBP6.5□□□□□ -1.37
VPS39-213ENST00000570062 HLA-DRB5Q30154 266 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 VMA21Q3ZAQ7 101 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 RPL39P5Q59GN2 51 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 PDZD9Q8IXQ8 264 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 LRRC75A-AS1Q8N1F1 130 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 STPG2Q8N412 459 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 C11orf42Q8N5U0 333 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 TMEM252Q8N6L7 170 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 OR1S2Q8NGQ3 325 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 OR5B3Q8NH48 314 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 RPEQ96AT9 228 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 PINX1Q96BK5 328 aaKnown RBP6.5□□□□□ -1.37
VPS39-213ENST00000570062 RHOVQ96L33 236 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 GGACTQ9BVM4 153 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 LPAR2Q9HBW0 351 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 MED9Q9NWA0 146 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 PSENENQ9NZ42 101 aa6.5□□□□□ -1.37
VPS39-213ENST00000570062 DPM3Q9P2X0 92 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms