RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 HIST1H4GQ99525 98 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 EBPLQ9BY08 206 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 TMEM222Q9H0R3 208 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 RBM38Q9H0Z9 239 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 C6orf106Q9H6K1 298 aaPredicted RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 MOB1AQ9H8S9 216 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 CCL28Q9NRJ3 127 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 OPTCQ9UBM4 332 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 CCL26Q9Y258 94 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 FAM32AQ9Y421 112 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 WSB1Q9Y6I7 421 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 WNK2Q9Y3S1 2297 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 YLPM1P49750 1951 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 MALRD1Q5VYJ5 2156 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 IGHV4-30-2A0A087WSY4 118 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 A0A087WW49 117 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 SMIM26A0A096LP01 95 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 IGKV6D-21A0A0A0MT36 114 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 TRAV8-6A0A0B4J262 113 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 A0A0U1RQV1 116 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 LCE6AA0A183 80 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 XKRYO14609 159 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 AGPAT2O15120 278 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 NDUFS5O43920 106 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 ZNF780AO75290 641 aaPredicted RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 DHRS3O75911 302 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 ATG12O94817 140 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 IGF2P01344 180 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 FBP1P09467 338 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 HSD17B1P14061 328 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 VDAC1P21796 283 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 RPS3P23396 243 aaKnown RBP eCLIP2.2□□□□□ -2.06
VPS35-209ENST00000568642 GLRXP35754 106 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 MARCKSL1P49006 195 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 MEOX2P50222 304 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 LHX2P50458 406 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 ARPP19P56211 112 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 H2BFSP57053 126 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 ESRRGP62508 458 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 ENDOGQ14249 297 aaKnown RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 SPA17Q15506 151 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 LRRC36Q1X8D7 754 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 IAH1Q2TAA2 248 aaPredicted RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 ARHGAP11BQ3KRB8 267 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 FBXL19-AS1Q494R0 122 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 C6orf99Q4VX62 202 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 TMEM128Q5BJH2 165 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 C9orf66Q5T8R8 295 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 LCN12Q6JVE5 192 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 NANOGP8Q6NSW7 305 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 RPL13AP3Q6NVV1 102 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 TOMM20LQ6UXN7 152 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 CHMP1BQ7LBR1 199 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 NAA40Q86UY6 237 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 KLHDC8BQ8IXV7 354 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 EXOC3-AS1Q8N2X6 119 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 SLC25A45Q8N413 288 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 STPG4Q8N801 248 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 COX18Q8N8Q8 333 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 AQP11Q8NBQ7 271 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 OR9I1Q8NGQ6 314 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 OR5J2Q8NH18 312 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 OR9G1Q8NH87 305 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 KCTD4Q8WVF5 259 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 TMEM190Q8WZ59 177 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 TMEM159Q96B96 161 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 RPUSD4Q96CM3 377 aaKnown RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 ZNF501Q96CX3 271 aaPredicted RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 SMIM12Q96EX1 92 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 DIRAS2Q96HU8 199 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 FOPNLQ96NB1 174 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 PITX2Q99697 317 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 KRTAP1-5Q9BYS1 174 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 SLC17A9Q9BYT1 436 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 PLEKHF2Q9H8W4 249 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 NANOGQ9H9S0 305 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 NMNAT1Q9HAN9 279 aaPredicted RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 ENY2Q9NPA8 101 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 PRNDQ9UKY0 176 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 KLF13Q9Y2Y9 288 aaPredicted RBP2.2□□□□□ -2.06
VPS35-209ENST00000568642 ORC6Q9Y5N6 252 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 FRAS1Q86XX4 4008 aa2.2□□□□□ -2.06
VPS35-209ENST00000568642 CHD5Q8TDI0 1954 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 FLG2Q5D862 2391 aaPredicted RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 IGHV6-1A0A0B4J1U7 121 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 TEX50A0A1B0GTY4 177 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 WI2-2373I1.2A0A1W2PRP0 233 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 TMEM250H0YL14 139 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 MANBAO00462 879 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 NTN3O00634 580 aaPredicted RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 PSPHP1O15172 72 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 CST8O60676 142 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 PGLYRP1O75594 196 aaPredicted RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 LYPLA1O75608 230 aaPredicted RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 MMP23AO75900 390 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 YIF1AO95070 293 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 FSTL3O95633 263 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 MT-CO2P00403 227 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 IFNGP01579 166 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms