RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	CNIH1	O95406	144 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	IGLV2-23	P01705	113 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	CLEC2L	P0C7M8	214 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR8U8	P0C7N1	319 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	SNRPB	P14678	240 aa	Known RBP	5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	CD40LG	P29965	261 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	CHRNA7	P36544	502 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	NDP	Q00604	133 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	IFITM2	Q01629	132 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	MXD1	Q05195	221 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	ZNF616	Q08AN1	781 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	FHL3	Q13643	280 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	FXYD3	Q14802	87 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	RTL8B	Q17RB0	113 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	ZNF260	Q3ZCT1	412 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	IDNK	Q5T6J7	187 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	PYHIN1	Q6K0P9	492 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	SFXN4	Q6P4A7	337 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	FAM122C	Q6P4D5	195 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	CNIH2	Q6PI25	160 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	BVES	Q8NE79	360 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	LFNG	Q8NES3	379 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	SLC25A46	Q96AG3	418 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	ADTRP	Q96IZ2	230 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR5B12	Q96R08	314 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	GNB4	Q9HAV0	340 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	PGPEP1	Q9NXJ5	209 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	PRKDC	P78527	4128 aa	Known RBP	5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	TRAV18	A0A075B6X5	111 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	TMEM235	A6NFC5	223 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	SRRM4	A7MD48	611 aa	Known RBP	5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	CTDSP2	O14595	271 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	ARPC1B	O15143	372 aa	Known RBP	5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	SHOX	O15266	292 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	SSX5	O60225	188 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	TMEM127	O75204	238 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	SLC22A5	O76082	557 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	CA2	P00918	260 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	HLA-DQB1	P01920	261 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	CRYGB	P07316	175 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	DUT	P33316	252 aa	Known RBP	5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	INSL3	P51460	131 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	LUM	P51884	338 aa	Predicted RBP	5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	SCAND1	P57086	179 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	GNB1	P62873	340 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	PJVK	Q0ZLH3	352 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	TMEM177	Q53S58	311 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	SLC38A6	Q8IZM9	456 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	TEX45	Q8NA69	505 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR5T1	Q8NG75	326 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	LGALS14	Q8TCE9	139 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	CASTOR1	Q8WTX7	329 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	NUDCD2	Q8WVJ2	157 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	DDB2	Q92466	427 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	DCUN1D4	Q92564	292 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	ARPC1A	Q92747	370 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	HARBI1	Q96MB7	349 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	MS4A10	Q96PG2	267 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	FAM103A1	Q9BTL3	118 aa	Known RBP	5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	AKIP1	Q9NQ31	210 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	ZNF355P	Q9NSJ1	428 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR2W1	Q9Y3N9	320 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	ETV7	Q9Y603	341 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635	COL7A1	Q02388	2944 aa		5.36	□□□□□ -1.55
SF3B3-209	ENST00000567635		A0A0A6YYH2	397 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	MSGN1	A6NI15	193 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635		A6NJ64	397 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	LINC00473	A8K010	186 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	LINC01619	G3V211	115 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635		H3BUA1	57 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	OVOL1	O14753	267 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	TRGV3	P03979	118 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	HSPB1	P04792	205 aa	Known RBP	5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	LGALS1	P09382	135 aa	Known RBP	5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	NFYA	P23511	347 aa	Predicted RBP	5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	TNFSF8	P32971	234 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ETV6	P41212	452 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ECI1	P42126	302 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	PPP5C	P53041	499 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	AP2S1	P53680	142 aa	Predicted RBP	5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	TPPP2	P59282	170 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	B2M	P61769	119 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ZNF45	Q02386	682 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	CD300C	Q08708	224 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	VMA21	Q3ZAQ7	101 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ASPHD1	Q5U4P2	390 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	MZT2A	Q6P582	158 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ZNF429	Q86V71	674 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	MFSD4A	Q8N468	514 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ZNF645	Q8N7E2	425 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR5H6	Q8NGV6	325 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	OSR1	Q8TAX0	266 aa	Predicted RBP	5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	DLX4	Q92988	240 aa	Predicted RBP	5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	C5orf30	Q96GV9	206 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	RHOV	Q96L33	236 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	TMEM68	Q96MH6	324 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ALX4	Q9H161	411 aa	Predicted RBP	5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	TPSG1	Q9NRR2	321 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	ANXA10	Q9UJ72	324 aa		5.35	□□□□□ -1.55
SF3B3-209	ENST00000567635	SPATA2	Q9UM82	520 aa		5.35	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 151.2 ms