RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CSN3P07498 182 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 CD36P16671 472 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 RHOGP84095 191 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 ATP5G2Q06055 141 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 FAM209BQ5JX69 171 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 HACD4Q5VWC8 232 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 NR2C2APQ86WQ0 139 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 MMD2Q8IY49 270 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 OR2K2Q8NGT1 345 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 ISOC1Q96CN7 298 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 DCUN1D5Q9BTE7 237 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 ST6GALNAC5Q9BVH7 336 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 ZNF430Q9H8G1 570 aaPredicted RBP14.26□□□□□ -0.13
CLN3-218ENST00000565688 TENM2Q9NT68 2774 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 TRBV9A0A0B4J1U6 114 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 NOTOA8MTQ0 251 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 FCGR3BO75015 233 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 RBMXL2O75526 392 aaKnown RBP14.25□□□□□ -0.13
CLN3-218ENST00000565688 TUSC2O75896 110 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 HLA-DQB1P01920 261 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 SAA1P0DJI8 122 aaPredicted RBP14.25□□□□□ -0.13
CLN3-218ENST00000565688 GABARAPL2P60520 117 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 KCTD9Q7L273 389 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 SLC25A42Q86VD7 318 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 NECAP1Q8NC96 275 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 SPATA25Q9BR10 227 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 TUBA4BQ9H853 241 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 AKIP1Q9NQ31 210 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 ELF5Q9UKW6 265 aaPredicted RBP14.25□□□□□ -0.13
CLN3-218ENST00000565688 RAB26Q9ULW5 256 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 TNCP24821 2201 aa14.25□□□□□ -0.13
CLN3-218ENST00000565688 FGF9P31371 208 aaPredicted RBP14.24□□□□□ -0.13
CLN3-218ENST00000565688 EXOSC2Q13868 293 aaKnown RBP14.24□□□□□ -0.13
CLN3-218ENST00000565688 CNIH2Q6PI25 160 aa14.24□□□□□ -0.13
CLN3-218ENST00000565688 TTC9CQ8N5M4 171 aa14.24□□□□□ -0.13
CLN3-218ENST00000565688 THAP7Q9BT49 309 aaPredicted RBP14.24□□□□□ -0.13
CLN3-218ENST00000565688 ADAM30Q9UKF2 790 aa14.24□□□□□ -0.13
CLN3-218ENST00000565688 RBMX2Q9Y388 322 aaKnown RBP14.24□□□□□ -0.13
CLN3-218ENST00000565688 DYNC2H1Q8NCM8 4307 aaKnown RBP14.23□□□□□ -0.13
CLN3-218ENST00000565688 J3QRK9 145 aa14.23□□□□□ -0.13
CLN3-218ENST00000565688 BMPR1BO00238 502 aa14.23□□□□□ -0.13
CLN3-218ENST00000565688 NFYAP23511 347 aaPredicted RBP14.23□□□□□ -0.13
CLN3-218ENST00000565688 UBE2UQ5VVX9 321 aa14.23□□□□□ -0.13
CLN3-218ENST00000565688 TPRA1Q86W33 373 aa14.23□□□□□ -0.13
CLN3-218ENST00000565688 VSTM2AQ8TAG5 236 aa14.23□□□□□ -0.13
CLN3-218ENST00000565688 HSD17B10Q99714 261 aaKnown RBP14.23□□□□□ -0.13
CLN3-218ENST00000565688 EDA2RQ9HAV5 297 aa14.23□□□□□ -0.13
CLN3-218ENST00000565688 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.22□□□□□ -0.13
CLN3-218ENST00000565688 PRH1P02810 166 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 MECP2P51608 486 aaKnown RBP14.22□□□□□ -0.13
CLN3-218ENST00000565688 GNG2P59768 71 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 ZNF45Q02386 682 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 HAGHQ16775 308 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 LAX1Q8IWV1 398 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 OR4S2Q8NH73 311 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 FCGR1BQ92637 280 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 KCTD12Q96CX2 325 aaKnown RBP14.22□□□□□ -0.13
CLN3-218ENST00000565688 OR51E2Q9H255 320 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 TXNL4BQ9NX01 149 aaKnown RBP14.22□□□□□ -0.13
CLN3-218ENST00000565688 ZNF257Q9Y2Q1 563 aa14.22□□□□□ -0.13
CLN3-218ENST00000565688 SMIM30A4D0T7 59 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 TMEM235A6NFC5 223 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 IGLV2-14P01704 120 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 IFNA6P05013 189 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 RPL30P62888 115 aaKnown RBP14.21□□□□□ -0.13
CLN3-218ENST00000565688 OR2B11Q5JQS5 317 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 C10orf55Q5SWW7 151 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 NUDCD2Q8WVJ2 157 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 DAPK2Q9UIK4 370 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 ANXA10Q9UJ72 324 aa14.21□□□□□ -0.13
CLN3-218ENST00000565688 IZUMO1RA6ND01 250 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 KBTBD11O94819 623 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 PSMB9P28065 219 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 MAS1LP35410 378 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 C15orf32Q32M92 178 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 TCTEX1D2Q8WW35 142 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 OR2A7Q96R45 310 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 SSR3Q9UNL2 185 aa14.2□□□□□ -0.14
CLN3-218ENST00000565688 IGKV1D-13A0A0B4J2D9 117 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 DPPA5A6NC42 116 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 NPIPB5A8MRT5 1133 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 OR2J3O76001 311 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 IGKV1-13P0DP09 117 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 ZFAND6Q6FIF0 208 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 SFXN4Q6P4A7 337 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 ZNF66Q6ZN08 573 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 VKORC1L1Q8N0U8 176 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 SPARTQ8N0X7 666 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 TMEM167AQ8TBQ9 72 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 SPATA2Q9UM82 520 aa14.19□□□□□ -0.14
CLN3-218ENST00000565688 RRP15Q9Y3B9 282 aaKnown RBP14.19□□□□□ -0.14
CLN3-218ENST00000565688 CSMD3Q7Z407 3707 aa14.18□□□□□ -0.14
CLN3-218ENST00000565688 LCE6AA0A183 80 aa14.18□□□□□ -0.14
CLN3-218ENST00000565688 TEX22C9J3V5 150 aa14.18□□□□□ -0.14
CLN3-218ENST00000565688 SSX5O60225 188 aa14.18□□□□□ -0.14
CLN3-218ENST00000565688 GGCTO75223 188 aaKnown RBP14.18□□□□□ -0.14
CLN3-218ENST00000565688 DHFRP00374 187 aa14.18□□□□□ -0.14
CLN3-218ENST00000565688 HRASP01112 189 aa14.18□□□□□ -0.14
CLN3-218ENST00000565688 KIR2DS2P43631 304 aa14.18□□□□□ -0.14
CLN3-218ENST00000565688 RPL27AP46776 148 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms