RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 C10orf55Q5SWW7 151 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 SFXN4Q6P4A7 337 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 CNIH2Q6PI25 160 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 KCTD9Q7L273 389 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 VKORC1L1Q8N0U8 176 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 Q8N1Y9 231 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 OR9G4Q8NGQ1 327 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 OR5H6Q8NGV6 325 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 OSR1Q8TAX0 266 aaPredicted RBP7.81□□□□□ -1.16
LDLR-214ENST00000560628 SRSF12Q8WXF0 261 aaKnown RBP7.81□□□□□ -1.16
LDLR-214ENST00000560628 FCGR1BQ92637 280 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 USMG5Q96IX5 58 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 RCHY1Q96PM5 261 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 GPHA2Q96T91 129 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 YTHDF1Q9BYJ9 559 aaKnown RBP7.81□□□□□ -1.16
LDLR-214ENST00000560628 DCSTAMPQ9H295 470 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 SPATA2Q9UM82 520 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 RBMX2Q9Y388 322 aaKnown RBP7.81□□□□□ -1.16
LDLR-214ENST00000560628 PRELID3BQ9Y3B1 194 aa7.81□□□□□ -1.16
LDLR-214ENST00000560628 TNCP24821 2201 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 NBEAL2Q6ZNJ1 2754 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 LOC100506127A0A0U1RQW1 187 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 HMX3A6NHT5 357 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 BRI3O95415 125 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 IGHV4-30-4P0DP06 118 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 RHOGP84095 191 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 ATP5G2Q06055 141 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 CDK10Q15131 360 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 TATDN3Q17R31 274 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 RPEL1Q2QD12 228 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 IDNKQ5T6J7 187 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 ZNF773Q6PK81 442 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 TCTEX1D2Q8WW35 142 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 SNAPC3Q92966 411 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 AKIP1Q9NQ31 210 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 RHBDL2Q9NX52 303 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 ANXA10Q9UJ72 324 aa7.8□□□□□ -1.16
LDLR-214ENST00000560628 C3orf84H3BNL1 204 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 SCGNO76038 276 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 SLC22A5O76082 557 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 CSN3P07498 182 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 CD36P16671 472 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 BRWD1-AS2P59051 145 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 ZNF45Q02386 682 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 NEDD8Q15843 81 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 C19orf35Q6ZS72 473 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 MMD2Q8IY49 270 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 MFSD4AQ8N468 514 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 GVQW1Q8N7I0 195 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 HSD17B10Q99714 261 aaKnown RBP7.79□□□□□ -1.16
LDLR-214ENST00000560628 SPIN2AQ99865 258 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 SPIN2BQ9BPZ2 258 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 ZMAT4Q9H898 229 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 CCL28Q9NRJ3 127 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 TAS2R8Q9NYW2 309 aa7.79□□□□□ -1.16
LDLR-214ENST00000560628 MRPS7Q9Y2R9 242 aaKnown RBP7.79□□□□□ -1.16
LDLR-214ENST00000560628 IZUMO1RA6ND01 250 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 E7EUB6 86 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 H0Y980 276 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 BMPR1BO00238 502 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 TNFSF12O43508 249 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 OR2J3O76001 311 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 OR2A4O95047 310 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 FCGR2CP31995 323 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 ARPC4P59998 168 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 EIF4EBP1Q13541 118 aaPredicted RBP7.78□□□□□ -1.16
LDLR-214ENST00000560628 EXOSC2Q13868 293 aaKnown RBP7.78□□□□□ -1.16
LDLR-214ENST00000560628 SSX9Q7RTT3 188 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 SGPP2Q8IWX5 399 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 TTC9CQ8N5M4 171 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 BEST4Q8NFU0 473 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 OR4S2Q8NH73 311 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 MUC7Q8TAX7 377 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 SECTM1Q8WVN6 248 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 SLC25A38Q96DW6 304 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 FYTTD1Q96QD9 318 aaKnown RBP7.78□□□□□ -1.16
LDLR-214ENST00000560628 OR2A7Q96R45 310 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 C19orf73Q9NVV2 129 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 TENM3Q9P273 2699 aa7.78□□□□□ -1.16
LDLR-214ENST00000560628 TRBV9A0A0B4J1U6 114 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 DPPA5A6NC42 116 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 FAM223BA6NKX1 122 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 TEX22C9J3V5 150 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 CREBL2O60519 120 aaPredicted RBP7.77□□□□□ -1.17
LDLR-214ENST00000560628 IGHV3-23P01764 117 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 HLA-AP01891 365 aaKnown RBP7.77□□□□□ -1.17
LDLR-214ENST00000560628 IL6RP08887 468 aaPredicted RBP7.77□□□□□ -1.17
LDLR-214ENST00000560628 MYOD1P15172 320 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 RPL27AP46776 148 aaKnown RBP7.77□□□□□ -1.17
LDLR-214ENST00000560628 HOGA1Q86XE5 327 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 FAM223AQ8IWN6 122 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 NECAP1Q8NC96 275 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 TUBA4BQ9H853 241 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 DIABLOQ9NR28 239 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 FBXL7Q9UJT9 491 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 ETV7Q9Y603 341 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 S4R3C0 116 aa7.77□□□□□ -1.17
LDLR-214ENST00000560628 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.76□□□□□ -1.17
LDLR-214ENST00000560628 A0A1B0GW64 132 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 MEIS3P1A6NDR6 274 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms