RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ANKRD17O75179 2603 aaKnown RBP-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 TONSLQ96HA7 1378 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 RAB3GAP2Q9H2M9 1393 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 A0A087WUU8 490 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 IRGMA1A4Y4 181 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 M0R381 172 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 SULT1C2O00338 296 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 CRXO43186 299 aaPredicted RBP-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 SHBGP04278 402 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 RNASE3P12724 160 aaKnown RBP-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 SLCO1A2P46721 670 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 SPINK7P58062 85 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 TMEM267Q0VDI3 215 aaPredicted RBP-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 GNA13Q14344 377 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 ZNF345Q14585 488 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 GDF5OSQ5U4N7 250 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 AAED1Q7RTV5 226 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 DHFR2Q86XF0 187 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 Q8WTZ3 238 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 RNASE6Q93091 150 aaKnown RBP-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 TOP1MTQ969P6 601 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 TMEM56Q96MV1 263 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 OR7D2Q96RA2 312 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 TMEM109Q9BVC6 243 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 METTL8Q9H825 291 aaKnown RBP-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 PLAC8Q9NZF1 115 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 EMC3Q9P0I2 261 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 CLEC2DQ9UHP7 191 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 LHFPL6Q9Y693 200 aa-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 TNRC6AQ8NDV7 1962 aaKnown RBP-0.14□□□□□ -2.43
VPS13C-205ENST00000558088 KIF24Q5T7B8 1368 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 OR2T8A6NH00 312 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 COPEO14579 308 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 LIN7AO14910 233 aaPredicted RBP-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 SLC22A1O15245 554 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 TNFAIP8O95379 198 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 PVALBP20472 110 aaPredicted RBP-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 ZNF846Q147U1 533 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 TMEM249Q2WGJ8 235 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 LCA10Q71F78 164 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 GKN2Q86XP6 184 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 C17orf78Q8N4C9 275 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 TBC1D19Q8N5T2 526 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 OR11H6Q8NGC7 330 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 CPNE2Q96FN4 548 aaPredicted RBP-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 PRRG3Q9BZD7 231 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 RAB1BQ9H0U4 201 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 NXT1Q9UKK6 140 aaKnown RBP-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 BAIAP2Q9UQB8 552 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 HDGFL3Q9Y3E1 203 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 BZW2Q9Y6E2 419 aaKnown RBP-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 TTC21AQ8NDW8 1320 aa-0.15□□□□□ -2.43
VPS13C-205ENST00000558088 SNRNP200O75643 2136 aaKnown RBP-0.16□□□□□ -2.43
VPS13C-205ENST00000558088 OR6C6A6NF89 314 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 GOLGA6L10A6NI86 522 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 TRAPPC2LH3BP13 241 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 HYPMO75409 117 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 DNAL4O96015 105 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 CRYGCP07315 174 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 KRTAP2-3P0C7H8 128 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 METTL15P1P0C7V9 234 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 NQO2P16083 231 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 ZNF25P17030 456 aaPredicted RBP-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 GRPRP30550 384 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 OR4D2P58180 307 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 HPCAP84074 193 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 SRSF6Q13247 344 aaKnown RBP-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 CIRBPQ14011 172 aaKnown RBP-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 MRPL52Q86TS9 123 aaKnown RBP-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 TLCD1Q96CP7 247 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 OPTNQ96CV9 577 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 MS4A6EQ96DS6 147 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 SMIM12Q96EX1 92 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 KRTAP2-4Q9BYR9 128 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 KRTAP2-1Q9BYU5 128 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 PSME2Q9UL46 239 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 RBMX2Q9Y388 322 aaKnown RBP-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 EXPH5Q8NEV8 1989 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 CPAMD8Q8IZJ3 1885 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 RP1P56715 2156 aa-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 SCAF11Q99590 1463 aaKnown RBP-0.16□□□□□ -2.44
VPS13C-205ENST00000558088 TNCP24821 2201 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 MYO15BQ96JP2 1530 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 LOC110117498A0A087WWA1 95 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 TRBV10-2A0A0K0K1G8 114 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 A0A1B0GX12 115 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 GGT3PA6NGU5 568 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 METTL15A6NJ78 407 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 C9JCJ5 164 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 FADS1O60427 444 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 OR5F1O95221 314 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 LDOC1O95751 146 aaPredicted RBP-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 LIMS3P0CW19 117 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 LIMS4P0CW20 117 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 SULT1A3P0DMM9 295 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 SULT1A4P0DMN0 295 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 CFL1P23528 166 aaKnown RBP-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 CSN1S1P47710 185 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 OR10A3P58181 314 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 RAB8AP61006 207 aa-0.17□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms