RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ATP6V0CP27449 155 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 CD80P33681 288 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 CEACAM6P40199 344 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 KIR2DS2P43631 304 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 OR3A1P47881 315 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 LMO4P61968 165 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 HTD2P86397 168 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 SCGB2A2Q13296 93 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 CLINT1Q14677 625 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 GUK1Q16774 197 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 TMEM182Q6ZP80 229 aaPredicted RBP9.14□□□□□ -0.95
SHMT2-216ENST00000554975 GCSAMQ8N6F7 178 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 OR2G3Q8NGZ4 309 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 FAM213BQ8TBF2 198 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 SCGB1C1Q8TD33 95 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 LRRC29Q8WV35 223 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 DUX5Q96PT3 197 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 MS4A7Q9GZW8 240 aaPredicted RBP9.14□□□□□ -0.95
SHMT2-216ENST00000554975 CACNG5Q9UF02 275 aa9.14□□□□□ -0.95
SHMT2-216ENST00000554975 FAM90A9PA6NNJ1 464 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 C12orf77C9JDV5 145 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 H7C2Y5 167 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 ITGB1BP1O14713 200 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 TNFSF12O43508 249 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 HBZP02008 142 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 COL8A2P25067 703 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 DYNLT3P51808 116 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 NHLH2Q02577 135 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 RHEBQ15382 184 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 ATP6V1FQ16864 119 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 CXorf66Q5JRM2 361 aaPredicted RBP9.13□□□□□ -0.95
SHMT2-216ENST00000554975 KRBOX4Q5JUW0 171 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 FAM122CQ6P4D5 195 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 PRR18Q8N4B5 295 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 BOLLQ8N9W6 283 aaKnown RBP9.13□□□□□ -0.95
SHMT2-216ENST00000554975 OR8U1Q8NH10 309 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 PINX1Q96BK5 328 aaKnown RBP9.13□□□□□ -0.95
SHMT2-216ENST00000554975 GPR146Q96CH1 333 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 SNX22Q96L94 193 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 OR2D2Q9H210 308 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 WFDC1Q9HC57 220 aa9.13□□□□□ -0.95
SHMT2-216ENST00000554975 IGLV3-9A0A075B6K5 115 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 C17orf100A8MU93 164 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 CHST1O43916 411 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 GZMHP20718 246 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 GATA4P43694 442 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 GPR6P46095 362 aaPredicted RBP9.12□□□□□ -0.95
SHMT2-216ENST00000554975 PPT1P50897 306 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 RAB7AP51149 207 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 CCL8P80075 99 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 SERF2P84101 59 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 PRAMEF6Q5VXH4 476 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 LILRB2Q8N423 598 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 CLCC1Q96S66 551 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 DIRC2Q96SL1 478 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 EIF5A2Q9GZV4 153 aaKnown RBP9.12□□□□□ -0.95
SHMT2-216ENST00000554975 MAGT1Q9H0U3 335 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 SMCO4Q9NRQ5 59 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 OR6C3Q9NZP0 311 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 PPP1R3CQ9UQK1 317 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 TIMM9Q9Y5J7 89 aa9.12□□□□□ -0.95
SHMT2-216ENST00000554975 TRAV1-1A0A0B4J248 108 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 TRAV20A0A0B4J274 112 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 H0YL77 283 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 RAB29O14966 203 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 RBFOX2O43251 390 aaKnown RBP eCLIP9.11□□□□□ -0.955e-15■■■■■ 33.3
SHMT2-216ENST00000554975 PPIHO43447 177 aaKnown RBP9.11□□□□□ -0.95
SHMT2-216ENST00000554975 SPRY3O43610 288 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 PSPNO60542 156 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 NDUFS6O75380 124 aaKnown RBP9.11□□□□□ -0.95
SHMT2-216ENST00000554975 IFNA1P01562 189 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 H2AFB1P0C5Y9 115 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 OMGP23515 440 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 TAGLN2P37802 199 aaKnown RBP9.11□□□□□ -0.95
SHMT2-216ENST00000554975 COL10A1Q03692 680 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 AKR1C1Q04828 323 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 GUCA2BQ16661 112 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 ATRAIDQ6UW56 229 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 Q6ZR03 302 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 C11orf53Q8IXP5 236 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.11□□□□□ -0.95
SHMT2-216ENST00000554975 OR2Z1Q8NG97 314 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 OR1L1Q8NH94 360 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 TCTEX1D2Q8WW35 142 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 COQ2Q96H96 371 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 SLC35B3Q9H1N7 401 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 TMEM231Q9H6L2 316 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 PSENENQ9NZ42 101 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 FAM96BQ9Y3D0 163 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 KIAA2026Q5HYC2 2103 aa9.11□□□□□ -0.95
SHMT2-216ENST00000554975 FAM74A7A6NL05 159 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 YPEL1O60688 119 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 CST7O76096 145 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 FSHBP01225 129 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 IGKV1-5P01602 117 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 IGLV2-14P01704 120 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 PRDX2P32119 198 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 ERVK-16P61578 105 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 TNFRSF9Q07011 255 aa9.1□□□□□ -0.95
SHMT2-216ENST00000554975 FAM74A3Q4VXF1 159 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms