RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PIGBOS1A0A0B4J2F0 54 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 NDUFB3O43676 98 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 EIF3GO75821 320 aaKnown RBP eCLIP11.78□□□□□ -0.52
VPS33A-209ENST00000544349 BRWD1-AS2P59051 145 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 LINC00205P59089 165 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 RHEBQ15382 184 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 ZNF726P1Q15940 193 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 SLC25A24Q6NUK1 477 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 CYB561D1Q8N8Q1 229 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 BIN3Q9NQY0 253 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 GFOD1Q9NXC2 390 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 CTSZQ9UBR2 303 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 LINC00312Q9Y6C7 94 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 SPTBN1Q01082 2364 aaKnown RBP11.77□□□□□ -0.52
VPS33A-209ENST00000544349 A0A1W2PPE3 182 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 BTBD17A6NE02 478 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 S1PR2O95136 353 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 IFNA5P01569 189 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 PRB1P04280 392 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 G6PCP35575 357 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 MEF2CQ06413 473 aaPredicted RBP11.77□□□□□ -0.52
VPS33A-209ENST00000544349 LRRC10Q5BKY1 277 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 ZNF506Q5JVG8 444 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 DTX2Q86UW9 622 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 IDI2-AS1Q9NZ38 188 aa11.77□□□□□ -0.52
VPS33A-209ENST00000544349 SMG1Q96Q15 3661 aaKnown RBP11.77□□□□□ -0.53
VPS33A-209ENST00000544349 C17orf98A8MV24 154 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 ITGB1BP1O14713 200 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 FSTL3O95633 263 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 P0C879 139 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF134P52741 427 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 RPL31P62899 125 aaKnown RBP11.77□□□□□ -0.53
VPS33A-209ENST00000544349 SPANXN5Q5MJ07 72 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 FAM24BQ8N5W8 94 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 RBKSQ9H477 322 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 RPRMQ9NS64 109 aa11.77□□□□□ -0.53
VPS33A-209ENST00000544349 CHD6Q8TD26 2715 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 H3BQ15 152 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 DVL1O14640 695 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 PPIHO43447 177 aaKnown RBP11.76□□□□□ -0.53
VPS33A-209ENST00000544349 IGHV3-7P01780 117 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 HOXA1P49639 335 aaPredicted RBP11.76□□□□□ -0.53
VPS33A-209ENST00000544349 UBE2KP61086 200 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 CATR1Q13166 79 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 UTF1Q5T230 341 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 RAB39BQ96DA2 213 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 OR4C12Q96R67 309 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 COA4Q9NYJ1 87 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 MMP24Q9Y5R2 645 aa11.76□□□□□ -0.53
VPS33A-209ENST00000544349 UBE2L5PA0A1B0GUS4 154 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 LOC102723971A0A1B0GUV8 181 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 MMP23AO75900 390 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 KRASP01116 189 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 MT-ND4LP03901 98 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 GPR12P47775 334 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 FGF8P55075 233 aaPredicted RBP11.75□□□□□ -0.53
VPS33A-209ENST00000544349 RAB5BP61020 215 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 TLE4Q04727 773 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 HNF4GQ14541 408 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 TMEM30BQ3MIR4 351 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 Q3ZCU0 254 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF66Q6ZN08 573 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 LILRB2Q8N423 598 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 NEU4Q8WWR8 484 aaPredicted RBP11.75□□□□□ -0.53
VPS33A-209ENST00000544349 YPEL4Q96NS1 127 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 TUBA4BQ9H853 241 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 YLPM1P49750 1951 aaKnown RBP11.75□□□□□ -0.53
VPS33A-209ENST00000544349 PCP4L1A6NKN8 68 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 LINC00473A8K010 186 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 SLC31A2O15432 143 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 PROP1O75360 226 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 CLDN1O95832 211 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 IGHV2-70P01814 119 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 RAB5AP20339 215 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 SNRPEP62304 92 aaKnown RBP11.75□□□□□ -0.53
VPS33A-209ENST00000544349 TNFRSF9Q07011 255 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 TMEM200BQ69YZ2 307 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 LCN15Q6UWW0 184 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 DPPA3Q6W0C5 159 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 H1FXQ92522 213 aaKnown RBP11.75□□□□□ -0.53
VPS33A-209ENST00000544349 HSD17B10Q99714 261 aaKnown RBP11.75□□□□□ -0.53
VPS33A-209ENST00000544349 IFI27L2Q9H2X8 130 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 SMDT1Q9H4I9 107 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 LAMP3Q9UQV4 416 aa11.75□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF98A6NK75 572 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF727A8MUV8 499 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 C1orf196B1AJZ1 125 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 RAB7AP51149 207 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 ELLP55199 621 aaPredicted RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 RPS16P62249 146 aaKnown RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 SLC38A11Q08AI6 406 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 LRRC75BQ2VPJ9 315 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 CT45A1Q5HYN5 189 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 OR8G2PQ6IF36 304 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 TCTEX1D1Q8N7M0 179 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 OR10A7Q8NGE5 316 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 CT45A3Q8NHU0 189 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 TCTEX1D2Q8WW35 142 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 LEAP2Q969E1 77 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 RCC1LQ96I51 464 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms