RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 A1L4Q6 167 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 FAM24AA6NFZ4 105 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 C17orf98A8MV24 154 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 TFF1P04155 84 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 SOD3P08294 240 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 RPL8P62917 257 aaKnown RBP6.9□□□□□ -1.3
USP54-215ENST00000497106 TFF3Q07654 80 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 RPL39P5Q59GN2 51 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 LYPD2Q6UXB3 125 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 CORTO00230 105 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 S100PP25815 95 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 ACOT6Q3I5F7 207 aaPredicted RBP6.9□□□□□ -1.3
USP54-215ENST00000497106 DPPA3Q6W0C5 159 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 OR4D5Q8NGN0 318 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 OR5C1Q8NGR4 320 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 OR2T10Q8NGZ9 312 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 IFI27L2Q9H2X8 130 aa6.9□□□□□ -1.3
USP54-215ENST00000497106 IGHV2-26A0A0B4J1V2 119 aa6.9□□□□□ -1.31
USP54-215ENST00000497106 FBXO24O75426 580 aa6.9□□□□□ -1.31
USP54-215ENST00000497106 KBTBD11O94819 623 aa6.9□□□□□ -1.31
USP54-215ENST00000497106 MYO7BQ6PIF6 2116 aa6.9□□□□□ -1.31
USP54-215ENST00000497106 C22orf34Q6ZV56 151 aa6.9□□□□□ -1.31
USP54-215ENST00000497106 HSD17B11Q8NBQ5 300 aa6.9□□□□□ -1.31
USP54-215ENST00000497106 RBMXL1Q96E39 390 aaKnown RBP6.9□□□□□ -1.31
USP54-215ENST00000497106 SEC11BP0C7V7 166 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 HKR1P10072 659 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 DEFA4P12838 97 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 ZP3P21754 424 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 PRTN3P24158 256 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 PEA15Q15121 130 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 HLA-DRB5Q30154 266 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 ETV3LQ6ZN32 361 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 SAT2Q96F10 170 aaPredicted RBP6.89□□□□□ -1.31
USP54-215ENST00000497106 LINC00574Q9H8X3 128 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 TREM1Q9NP99 234 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 A0A1W2PPV4 95 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 LYL1P12980 280 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 CXCL2P19875 107 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 DVL1P1P54792 670 aaPredicted RBP6.89□□□□□ -1.31
USP54-215ENST00000497106 NMSQ5H8A3 153 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 CT45A1Q5HYN5 189 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 C11orf71Q6IPW1 123 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 TMEM252Q8N6L7 170 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 CT45A3Q8NHU0 189 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 PERPQ96FX8 193 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 GGACTQ9BVM4 153 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 RBKSQ9H477 322 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 BET1LQ9NYM9 111 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 OR5AC2Q9NZP5 309 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 THYN1Q9P016 225 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 MPDU1O75352 247 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 GNB1P62873 340 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 SSX2Q16385 188 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 CLRN3Q8NCR9 226 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 RASL11BQ9BPW5 248 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 MRPL20Q9BYC9 149 aaKnown RBP6.89□□□□□ -1.31
USP54-215ENST00000497106 SNRNP70P08621 437 aaKnown RBP6.89□□□□□ -1.31
USP54-215ENST00000497106 NPY1RP25929 384 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 RPL27AP46776 148 aaKnown RBP6.89□□□□□ -1.31
USP54-215ENST00000497106 ID3Q02535 119 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 C2orf68Q2NKX9 166 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 RBMS3Q6XE24 437 aaKnown RBP6.89□□□□□ -1.31
USP54-215ENST00000497106 TEX45Q8NA69 505 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 UBAC2Q8NBM4 344 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 C8orf46Q8TAG6 207 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 LEAP2Q969E1 77 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 PITPNC1Q9UKF7 332 aa6.89□□□□□ -1.31
USP54-215ENST00000497106 TRAV14DV4A0A0A6YYC5 116 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 ZNF833PQ6ZTB9 187 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 RNF2Q99496 336 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 MLXQ9UH92 298 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 CST7O76096 145 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 FGF7P21781 194 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 DYNLT3P51808 116 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 TMEM267Q0VDI3 215 aaPredicted RBP6.88□□□□□ -1.31
USP54-215ENST00000497106 TNXAQ16473 311 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 SLC24A4Q8NFF2 622 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 ZDHHC16Q969W1 377 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 SIRT7Q9NRC8 400 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 TCF19Q9Y242 345 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 ZNF257Q9Y2Q1 563 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 B4DSR2 109 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 HNF1AP20823 631 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 LCN2P80188 198 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 MMDQ15546 238 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 SPRNQ5BIV9 151 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 Q5BKY6 102 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 IL34Q6ZMJ4 242 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 Q6ZRG5 221 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 OR11H4Q8NGC9 324 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 ACTR3CQ9C0K3 210 aaPredicted RBP6.88□□□□□ -1.31
USP54-215ENST00000497106 C15orf61A6NNL5 157 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 NCBP2LA6PVI3 153 aaKnown RBP6.88□□□□□ -1.31
USP54-215ENST00000497106 UPK2O00526 184 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 SMIM6P0DI80 62 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 REG1BP48304 166 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 LOXL3P58215 753 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 HNF4GQ14541 408 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 CXorf66Q5JRM2 361 aaPredicted RBP6.88□□□□□ -1.31
USP54-215ENST00000497106 OR4A47Q6IF82 309 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms