RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 DEFB121Q5J5C9 76 aa16.78■□□□□ 0.28
COL9A3-211ENST00000477612 OR5T1Q8NG75 326 aa16.78■□□□□ 0.28
COL9A3-211ENST00000477612 DLX4Q92988 240 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-211ENST00000477612 CMTM3Q96MX0 182 aa16.78■□□□□ 0.28
COL9A3-211ENST00000477612 A0A0G2JLM5 398 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 CREBL2O60519 120 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-211ENST00000477612 PPYP01298 95 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 IGHV3-11P01762 117 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 SAA1P0DJI8 122 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-211ENST00000477612 DCTN2Q13561 401 aaKnown RBP16.77■□□□□ 0.28
COL9A3-211ENST00000477612 IDO2Q6ZQW0 420 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 MMD2Q8IY49 270 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 SAMD12Q8N8I0 201 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 OR4S2Q8NH73 311 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 SRSF12Q8WXF0 261 aaKnown RBP16.77■□□□□ 0.28
COL9A3-211ENST00000477612 TINAGL1Q9GZM7 467 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-211ENST00000477612 CCL28Q9NRJ3 127 aa16.77■□□□□ 0.28
COL9A3-211ENST00000477612 MSGN1A6NI15 193 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 NAT1P18440 290 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 SLURP1P55000 103 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 TAS2R20P59543 309 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 NCS1P62166 190 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 TNXAQ16473 311 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 ZNF429Q86V71 674 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 DCUN1D5Q9BTE7 237 aa16.76■□□□□ 0.27
COL9A3-211ENST00000477612 ZNF430Q9H8G1 570 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-211ENST00000477612 VBP1P61758 197 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 TMEM69Q5SWH9 247 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 DHRS11Q6UWP2 260 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 PUSL1Q8N0Z8 303 aaKnown RBP16.75■□□□□ 0.27
COL9A3-211ENST00000477612 VSTM2AQ8TAG5 236 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 SECTM1Q8WVN6 248 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 TCTEX1D2Q8WW35 142 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 RANGRFQ9HD47 186 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-211ENST00000477612 ZNF355PQ9NSJ1 428 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 TAS2R8Q9NYW2 309 aa16.75■□□□□ 0.27
COL9A3-211ENST00000477612 LSM4Q9Y4Z0 139 aaKnown RBP16.75■□□□□ 0.27
COL9A3-211ENST00000477612 SMIM18P0DKX4 95 aa16.74■□□□□ 0.27
COL9A3-211ENST00000477612 KIR2DS2P43631 304 aa16.74■□□□□ 0.27
COL9A3-211ENST00000477612 OR2B11Q5JQS5 317 aa16.74■□□□□ 0.27
COL9A3-211ENST00000477612 ACSM6Q6P461 480 aa16.74■□□□□ 0.27
COL9A3-211ENST00000477612 ADAD2Q8NCV1 583 aaKnown RBP16.74■□□□□ 0.27
COL9A3-211ENST00000477612 PHB2Q99623 299 aa16.74■□□□□ 0.27
COL9A3-211ENST00000477612 C13orf42A0A1B0GVH6 325 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 MEIS3P1A6NDR6 274 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 RBFOX2O43251 390 aaKnown RBP eCLIP16.73■□□□□ 0.27
COL9A3-211ENST00000477612 OR2A4O95047 310 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 APOA1P02647 267 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 OR9G9P0C7N8 305 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 ECI1P42126 302 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 ANKRD13BQ86YJ7 626 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 TMEM167AQ8TBQ9 72 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 ACOT12Q8WYK0 555 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 USMG5Q96IX5 58 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 OR2A7Q96R45 310 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 SPIN2AQ99865 258 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 B9D2Q9BPU9 175 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 SPIN2BQ9BPZ2 258 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 IFT46Q9NQC8 304 aa16.73■□□□□ 0.27
COL9A3-211ENST00000477612 ACTL6BO94805 426 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 KBTBD11O94819 623 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 EIF4EP06730 217 aaKnown RBP16.72■□□□□ 0.27
COL9A3-211ENST00000477612 FCER2P06734 321 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 PRSS3P35030 304 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 DYRK1AQ13627 763 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 ZNF343Q6P1L6 599 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 TTC9CQ8N5M4 171 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 GPHA2Q96T91 129 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 SLC5A7Q9GZV3 580 aa16.72■□□□□ 0.27
COL9A3-211ENST00000477612 ZNF256Q9Y2P7 627 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-211ENST00000477612 TRBV9A0A0B4J1U6 114 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 GABARAPO95166 117 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 HRASP01112 189 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 MAS1LP35410 378 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 CTF1Q16619 201 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 VKORC1L1Q8N0U8 176 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 GPX8Q8TED1 209 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 BORCS5Q969J3 196 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 AIFM2Q9BRQ8 373 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 COA4Q9NYJ1 87 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 COMMD3Q9UBI1 195 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 ADAM30Q9UKF2 790 aa16.71■□□□□ 0.27
COL9A3-211ENST00000477612 RBMXL2O75526 392 aaKnown RBP16.7■□□□□ 0.26
COL9A3-211ENST00000477612 ZP3P21754 424 aa16.7■□□□□ 0.26
COL9A3-211ENST00000477612 GNRHRP30968 328 aa16.7■□□□□ 0.26
COL9A3-211ENST00000477612 ZNF818PQ6ZRF7 136 aa16.7■□□□□ 0.26
COL9A3-211ENST00000477612 SPAG16Q8N0X2 631 aa16.7■□□□□ 0.26
COL9A3-211ENST00000477612 PRR25Q96S07 402 aa16.7■□□□□ 0.26
COL9A3-211ENST00000477612 BET1LQ9NYM9 111 aa16.7■□□□□ 0.26
COL9A3-211ENST00000477612 EHFQ9NZC4 300 aa16.7■□□□□ 0.26
COL9A3-211ENST00000477612 TNFSF12O43508 249 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 IL6RP08887 468 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-211ENST00000477612 APELAP0DMC3 54 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 RFX2P48378 723 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 RORCP51449 518 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 TAS2R46P59540 309 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 FXYD4P59646 89 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 CATR1Q13166 79 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 POU2AF1Q16633 256 aa16.69■□□□□ 0.26
COL9A3-211ENST00000477612 C10orf55Q5SWW7 151 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms