RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PRSS8Q16651 343 aa10.82□□□□□ -0.68
UPF3A-204ENST00000475218 RTL8BQ17RB0 113 aa10.82□□□□□ -0.68
UPF3A-204ENST00000475218 ZNF645Q8N7E2 425 aa10.82□□□□□ -0.68
UPF3A-204ENST00000475218 DCUN1D5Q9BTE7 237 aa10.82□□□□□ -0.68
UPF3A-204ENST00000475218 RBM7Q9Y580 266 aaKnown RBP10.82□□□□□ -0.68
UPF3A-204ENST00000475218 H3BUA1 57 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 SAP30O75446 220 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 CNIH1O95406 144 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 TRBV12-3P01733 135 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 RRASP10301 218 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 PTHLHP12272 177 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 SPNP16150 400 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 TGFBR1P36897 503 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 CBX3Q13185 183 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 DYRK1AQ13627 763 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 CNIH2Q6PI25 160 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 HAPLN4Q86UW8 402 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 TEX45Q8NA69 505 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 ADTRPQ96IZ2 230 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 TINAGL1Q9GZM7 467 aaPredicted RBP10.81□□□□□ -0.68
UPF3A-204ENST00000475218 ANXA10Q9UJ72 324 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 ADAM30Q9UKF2 790 aa10.81□□□□□ -0.68
UPF3A-204ENST00000475218 LOC100506127A0A0U1RQW1 187 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 MSGN1A6NI15 193 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 SAA1P0DJI8 122 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-204ENST00000475218 CD36P16671 472 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 BCAP31P51572 246 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 C10orf55Q5SWW7 151 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 IL34Q6ZMJ4 242 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 OVCH2Q7RTZ1 564 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 GVQW1Q8N7I0 195 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 ADAD2Q8NCV1 583 aaKnown RBP10.8□□□□□ -0.68
UPF3A-204ENST00000475218 GPHA2Q96T91 129 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 ASCL2Q99929 193 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 ZNF430Q9H8G1 570 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-204ENST00000475218 RBMX2Q9Y388 322 aaKnown RBP10.8□□□□□ -0.68
UPF3A-204ENST00000475218 CTXN2P0C2S0 81 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 GNG2P59768 71 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 PITPNAQ00169 270 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 OR2B11Q5JQS5 317 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 ANKRD13BQ86YJ7 626 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 OSR1Q8TAX0 266 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-204ENST00000475218 SRSF12Q8WXF0 261 aaKnown RBP10.8□□□□□ -0.68
UPF3A-204ENST00000475218 ZNF355PQ9NSJ1 428 aa10.8□□□□□ -0.68
UPF3A-204ENST00000475218 ANKRD34BA5PLL1 514 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 FCGR3BO75015 233 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 LY86O95711 162 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 NHLRC4P0CG21 123 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-204ENST00000475218 SCAND1P57086 179 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 ZNF45Q02386 682 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 KLF5Q13887 457 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-204ENST00000475218 IDNKQ5T6J7 187 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 ZNF343Q6P1L6 599 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 VKORC1L1Q8N0U8 176 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 CENPSQ8N2Z9 138 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 WWC2-AS2Q96NR7 200 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 ETV7Q9Y603 341 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 DNAH7Q8WXX0 4024 aa10.79□□□□□ -0.68
UPF3A-204ENST00000475218 TRAV18A0A075B6X5 111 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 A0A1B0GW64 132 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 SCGNO76038 276 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 GP9P14770 177 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 CD40LGP29965 261 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 CDK10Q15131 360 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 TNXAQ16473 311 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 VMA21Q3ZAQ7 101 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 KCTD9Q7L273 389 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 SNAPC3Q92966 411 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 TMEM68Q96MH6 324 aa10.78□□□□□ -0.68
UPF3A-204ENST00000475218 E7EUB6 86 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 ATP6V1G1O75348 118 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 IGLV1-51P01701 117 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 PRH1P02810 166 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 AADACP22760 399 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 C19orf35Q6ZS72 473 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 HOGA1Q86XE5 327 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 SBSPONQ8IVN8 264 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 AUNIPQ9H7T9 357 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 RANGRFQ9HD47 186 aaPredicted RBP10.77□□□□□ -0.68
UPF3A-204ENST00000475218 COA4Q9NYJ1 87 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 SMAD5-AS1Q9Y6J3 95 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 U3KQK5 164 aa10.77□□□□□ -0.68
UPF3A-204ENST00000475218 TRBV9A0A0B4J1U6 114 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 C13orf42A0A1B0GVH6 325 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 FCER2P06734 321 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 OR9G9P0C7N8 305 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 ZNF182P17025 639 aaPredicted RBP10.77□□□□□ -0.69
UPF3A-204ENST00000475218 Q8N1Y9 231 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 BEST4Q8NFU0 473 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 ACOT12Q8WYK0 555 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 YIPF6Q96EC8 236 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 SPATA2Q9UM82 520 aa10.77□□□□□ -0.69
UPF3A-204ENST00000475218 A0A0G2JLM5 398 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 TEX22C9J3V5 150 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 TRIM16LQ309B1 348 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 PUSL1Q8N0Z8 303 aaKnown RBP10.76□□□□□ -0.69
UPF3A-204ENST00000475218 MFSD4AQ8N468 514 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 OR6Q1Q8NGQ2 317 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 AKIP1Q9NQ31 210 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 CCL28Q9NRJ3 127 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms