RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NPFFR1Q9GZQ6 430 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 NAA60Q9H7X0 242 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 PRR13Q9NZ81 148 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 METTL1Q9UBP6 276 aaKnown RBP11.72□□□□□ -0.53
COL9A3-209ENST00000469852 H0Y980 276 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 ARPC1BO15143 372 aaKnown RBP11.71□□□□□ -0.53
COL9A3-209ENST00000469852 TSPAN9O75954 239 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 HPRT1P00492 218 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 TCRBP04435 133 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 CRYBA1P05813 215 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 OR5AC1P0C628 307 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 HKR1P10072 659 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 S100GP29377 79 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 LGALS7P47929 136 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 RAG2P55895 527 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 PJVKQ0ZLH3 352 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 C9orf152Q5JTZ5 239 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 SSX9Q7RTT3 188 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 POC5Q8NA72 575 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 SCGB3A2Q96PL1 93 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 TSNAXQ99598 290 aaKnown RBP11.71□□□□□ -0.53
COL9A3-209ENST00000469852 KIAA1456Q9P272 454 aa11.71□□□□□ -0.53
COL9A3-209ENST00000469852 TEX13DA0A0J9YY54 714 aaPredicted RBP11.7□□□□□ -0.54
COL9A3-209ENST00000469852 M0QZK8 103 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 NDUFA7O95182 113 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 SPDEFO95238 335 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 ANXA7P20073 488 aaKnown RBP11.7□□□□□ -0.54
COL9A3-209ENST00000469852 MDKP21741 143 aaPredicted RBP11.7□□□□□ -0.54
COL9A3-209ENST00000469852 UBE2KP61086 200 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 SSBP2P81877 361 aaPredicted RBP11.7□□□□□ -0.54
COL9A3-209ENST00000469852 NDPQ00604 133 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 NRARPQ7Z6K4 114 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 PUSL1Q8N0Z8 303 aaKnown RBP11.7□□□□□ -0.54
COL9A3-209ENST00000469852 Q8N2B8 174 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 CENPSQ8N2Z9 138 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 TCTEX1D1Q8N7M0 179 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 LINC01006Q8NI28 216 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 LHFPL5Q8TAF8 219 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 CD300LFQ8TDQ1 290 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 GLYATL2Q8WU03 294 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 R3HDM4Q96D70 268 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 RASL11BQ9BPW5 248 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 C19orf24Q9BVV8 132 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 PRSS22Q9GZN4 317 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 C20orf85Q9H1P6 137 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 RANBP3Q9H6Z4 567 aaPredicted RBP11.7□□□□□ -0.54
COL9A3-209ENST00000469852 PLEKHA2Q9HB19 425 aa11.7□□□□□ -0.54
COL9A3-209ENST00000469852 TENM1Q9UKZ4 2725 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 TRAV6A0A075B6T7 132 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 IGHV7-81A0A0B4J1V7 117 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 TRAV3A0A0B4J244 114 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 FAM240BA0A1B0GVZ2 78 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 CA2P00918 260 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 HLA-DRB1P01911 266 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 SPNP16150 400 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 UCP1P25874 307 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 G6PCP35575 357 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 TAS2R31P59538 309 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 DHODHQ02127 395 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 PPP1R1AQ13522 171 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 PLGLAQ15195 96 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 MZT2BQ6NZ67 158 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 SLC25A42Q86VD7 318 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 SGPP2Q8IWX5 399 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 RHOVQ96L33 236 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM222Q9H0R3 208 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 C16orf95Q9H693 158 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 BEX1Q9HBH7 125 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 FAM212BQ9NTI7 297 aaPredicted RBP11.69□□□□□ -0.54
COL9A3-209ENST00000469852 SERTAD4Q9NUC0 356 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 NUDT15Q9NV35 164 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 COMMD9Q9P000 198 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 TNCP24821 2201 aa11.69□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM89A2RUT3 159 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 MARCH11A6NNE9 402 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 HRASP01112 189 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 KRASP01116 189 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 IGHG2P01859 326 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 NQO2P16083 231 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM187Q14656 261 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 POU2AF1Q16633 256 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 VMA21Q3ZAQ7 101 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM128Q5BJH2 165 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 OR4A47Q6IF82 309 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 LIN54Q6MZP7 749 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 PPP1R27Q86WC6 154 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 GALNT14Q96FL9 552 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 SEC22AQ96IW7 307 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 ZNF430Q9H8G1 570 aaPredicted RBP11.68□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM140Q9NV12 185 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 LINC00527Q9UJ94 153 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 FBXO7Q9Y3I1 522 aa11.68□□□□□ -0.54
COL9A3-209ENST00000469852 A0A0G2JRQ6 117 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 KBTBD11O94819 623 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 IGKV1-5P01602 117 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 SERPINE2P07093 398 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 IL6RP08887 468 aaPredicted RBP11.67□□□□□ -0.54
COL9A3-209ENST00000469852 OR9G9P0C7N8 305 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 MYOD1P15172 320 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 RAB25P57735 213 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms