RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 OR9G9P0C7N8 305 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 FRMD6-AS1P0C7T7 363 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 APELAP0DMC3 54 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 CD36P16671 472 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 SDC2P34741 201 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 GNG2P59768 71 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 RPL30P62888 115 aaKnown RBP12.46□□□□□ -0.41
COL9A3-208ENST00000469802 IL34Q6ZMJ4 242 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 RNF167Q9H6Y7 350 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 COA4Q9NYJ1 87 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 ETV7Q9Y603 341 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 TRBV9A0A0B4J1U6 114 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 CREBL2O60519 120 aaPredicted RBP12.45□□□□□ -0.42
COL9A3-208ENST00000469802 FCGR3BO75015 233 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 CLEC2LP0C7M8 214 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 ZNF45Q02386 682 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 OR9G4Q8NGQ1 327 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 OR5H6Q8NGV6 325 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 ACOT12Q8WYK0 555 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 PHB2Q99623 299 aa12.45□□□□□ -0.42
COL9A3-208ENST00000469802 HSD17B10Q99714 261 aaKnown RBP12.45□□□□□ -0.42
COL9A3-208ENST00000469802 PEF1Q9UBV8 284 aaKnown RBP12.45□□□□□ -0.42
COL9A3-208ENST00000469802 MRPS7Q9Y2R9 242 aaKnown RBP12.45□□□□□ -0.42
COL9A3-208ENST00000469802 FAM223BA6NKX1 122 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 J3QRK9 145 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 BRWD1-AS2P59051 145 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 MXD1Q05195 221 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 C10orf55Q5SWW7 151 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 FAM223AQ8IWN6 122 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 MMD2Q8IY49 270 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 Q8N1Y9 231 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 ADAM30Q9UKF2 790 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 PRELID3BQ9Y3B1 194 aa12.44□□□□□ -0.42
COL9A3-208ENST00000469802 A0A0A6YYH2 397 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 A6NJ64 397 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 A8MZ25 164 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 SYNJ2BPP57105 145 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 RHOGP84095 191 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 KCTD21Q4G0X4 260 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 OR2B11Q5JQS5 317 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 ANKRD13BQ86YJ7 626 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 TTC9CQ8N5M4 171 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 OR4S2Q8NH73 311 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 RCHY1Q96PM5 261 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 SPIN2AQ99865 258 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 SPIN2BQ9BPZ2 258 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 THAP7Q9BT49 309 aaPredicted RBP12.43□□□□□ -0.42
COL9A3-208ENST00000469802 RSRP1Q9BUV0 290 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 AKIP1Q9NQ31 210 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 SIGLEC8Q9NYZ4 499 aa12.43□□□□□ -0.42
COL9A3-208ENST00000469802 TEX22C9J3V5 150 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 MPPED1O15442 326 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 KBTBD11O94819 623 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 OR2A4O95047 310 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 MSMO1Q15800 293 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 ZNF66Q6ZN08 573 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 VKORC1L1Q8N0U8 176 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 PUSL1Q8N0Z8 303 aaKnown RBP12.42□□□□□ -0.42
COL9A3-208ENST00000469802 BEST4Q8NFU0 473 aa12.42□□□□□ -0.42
COL9A3-208ENST00000469802 TRAV18A0A075B6X5 111 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 LOC100506127A0A0U1RQW1 187 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 C3orf84H3BNL1 204 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 BMPR1BO00238 502 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 ACTL6BO94805 426 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 PRH1P02810 166 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 CSN3P07498 182 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 IGHV4-30-4P0DP06 118 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 EXOSC2Q13868 293 aaKnown RBP12.41□□□□□ -0.42
COL9A3-208ENST00000469802 NEDD8Q15843 81 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 IDNKQ5T6J7 187 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 HOGA1Q86XE5 327 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 GVQW1Q8N7I0 195 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 VSTM2AQ8TAG5 236 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 TMEM167AQ8TBQ9 72 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 TCTEX1D2Q8WW35 142 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 SNAPC3Q92966 411 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 OR2A7Q96R45 310 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 TM2D3Q9BRN9 247 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 DCUN1D5Q9BTE7 237 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 C19orf73Q9NVV2 129 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 TAS2R8Q9NYW2 309 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 SPATA2Q9UM82 520 aa12.41□□□□□ -0.42
COL9A3-208ENST00000469802 A0A1B0GW64 132 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 E7EUB6 86 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 TMEM127O75204 238 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 RPEL1Q2QD12 228 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 MFSD4AQ8N468 514 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 NECAP1Q8NC96 275 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 OR13F1Q8NGS4 319 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 GPHA2Q96T91 129 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 AUNIPQ9H7T9 357 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 ZNF257Q9Y2Q1 563 aa12.4□□□□□ -0.42
COL9A3-208ENST00000469802 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.39□□□□□ -0.43
COL9A3-208ENST00000469802 NPIPB5A8MRT5 1133 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 H0Y980 276 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 IL6RP08887 468 aaPredicted RBP12.39□□□□□ -0.43
COL9A3-208ENST00000469802 ZNF735P0CB33 412 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 PTHLHP12272 177 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 FCGR2CP31995 323 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 MAS1LP35410 378 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms