RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 ANXA3P12429 323 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 NQO2P16083 231 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 AKR1C4P17516 323 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 F2RL1P55085 397 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 RAG2P55895 527 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 UBE2KP61086 200 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 SUPT4H1P63272 117 aaKnown RBP12.09□□□□□ -0.47
NPHP4-205ENST00000466897 PRIMA1Q86XR5 153 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 TEX45Q8NA69 505 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 VSTM2AQ8TAG5 236 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 RITA1Q96K30 269 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 TMEM222Q9H0R3 208 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 TNFRSF19Q9NS68 423 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 NUDT15Q9NV35 164 aa12.09□□□□□ -0.47
NPHP4-205ENST00000466897 SRRM4A7MD48 611 aaKnown RBP12.08□□□□□ -0.48
NPHP4-205ENST00000466897 S1PR2O95136 353 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 CDS2O95674 445 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 CRYGBP07316 175 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 OR5AC1P0C628 307 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 SRPXP78539 464 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 PSG5Q15238 335 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 C5orf64Q2M2E5 130 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 VMA21Q3ZAQ7 101 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 Q8N2B8 174 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 GLYATL2Q8WU03 294 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 IL22RA2Q969J5 263 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 RHOVQ96L33 236 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 FLVCR2Q9UPI3 526 aa12.08□□□□□ -0.48
NPHP4-205ENST00000466897 NCBP2LA6PVI3 153 aaKnown RBP12.07□□□□□ -0.48
NPHP4-205ENST00000466897 CREBL2O60519 120 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-205ENST00000466897 PEX14O75381 377 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 TSPAN9O75954 239 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 ATG12O94817 140 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 NDUFA7O95182 113 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 SFT2D2O95562 160 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 HLA-DRB1P01911 266 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 H2AFB2P0C5Z0 115 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 CNTFRP26992 372 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 LPAR6P43657 344 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 PPP1R1AQ13522 171 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 TMEM187Q14656 261 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 PLET1Q6UQ28 207 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 PUSL1Q8N0Z8 303 aaKnown RBP12.07□□□□□ -0.48
NPHP4-205ENST00000466897 OR4A5Q8NH83 315 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 RBMXL1Q96E39 390 aaKnown RBP12.07□□□□□ -0.48
NPHP4-205ENST00000466897 TMEM56Q96MV1 263 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 RASL11BQ9BPW5 248 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 MARVELD1Q9BSK0 173 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 BET1LQ9NYM9 111 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 METTL1Q9UBP6 276 aaKnown RBP12.07□□□□□ -0.48
NPHP4-205ENST00000466897 SIGLEC9Q9Y336 463 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 TMEM56-RWDD3S4R434 201 aa12.07□□□□□ -0.48
NPHP4-205ENST00000466897 MARCH11A6NNE9 402 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 SLC25A17O43808 307 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 IGKV1-39P01597 117 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 IGKV1D-39P04432 117 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 CRYBA1P05813 215 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 IL6RP08887 468 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-205ENST00000466897 OR4E1P0C645 316 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 SAA1P0DJI8 122 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-205ENST00000466897 ERVK-16P61578 105 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 SP6Q3SY56 376 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 PPP1R27Q86WC6 154 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 LRTM2Q8N967 370 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 RBPMSQ93062 196 aaKnown RBP12.06□□□□□ -0.48
NPHP4-205ENST00000466897 R3HDM4Q96D70 268 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 PRSS22Q9GZN4 317 aa12.06□□□□□ -0.48
NPHP4-205ENST00000466897 TRAV6A0A075B6T7 132 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 DUXBA0A1W2PPF3 345 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 KBTBD11O94819 623 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 OR2A4O95047 310 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 HLA-AP01891 365 aaKnown RBP12.05□□□□□ -0.48
NPHP4-205ENST00000466897 ANXA7P20073 488 aaKnown RBP12.05□□□□□ -0.48
NPHP4-205ENST00000466897 VAMP1P23763 118 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 DHRS2Q13268 280 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 RGS21Q2M5E4 152 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 TRIM16LQ309B1 348 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 OR4A47Q6IF82 309 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 LIN54Q6MZP7 749 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 LYG2Q86SG7 212 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 LGI3Q8N145 548 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 TMEM167AQ8TBQ9 72 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 SEC22AQ96IW7 307 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 OR2A7Q96R45 310 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 FBXL15Q9H469 300 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 C16orf95Q9H693 158 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 ZNF702PQ9H963 129 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 ZNF580Q9UK33 172 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 TNCP24821 2201 aa12.05□□□□□ -0.48
NPHP4-205ENST00000466897 JMJD1CQ15652 2540 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 C9orf170A2RU37 121 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 KCNAB3O43448 404 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 PRAF2O60831 178 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 DUS4LO95620 317 aaKnown RBP12.04□□□□□ -0.48
NPHP4-205ENST00000466897 IGHG2P01859 326 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 IL5P05113 134 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 P0C879 139 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 HKR1P10072 659 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 BLCAPP62952 87 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 RELBQ01201 579 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms