RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 ZNF580Q9UK33 172 aa14.61□□□□□ -0.07
SHH-204ENST00000441114 NUBP2Q9Y5Y2 271 aa14.61□□□□□ -0.07
SHH-204ENST00000441114 ZNF701M0R085 212 aaPredicted RBP14.6□□□□□ -0.07
SHH-204ENST00000441114 RAMP3O60896 148 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 IGHG4P01861 327 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 RLN1P04808 185 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 ELANEP08246 267 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 PPIFP30405 207 aaKnown RBP14.6□□□□□ -0.07
SHH-204ENST00000441114 KIR2DS2P43631 304 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 TAS2R19P59542 299 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 MRPS10P82664 201 aaKnown RBP14.6□□□□□ -0.07
SHH-204ENST00000441114 TMEM267Q0VDI3 215 aaPredicted RBP14.6□□□□□ -0.07
SHH-204ENST00000441114 TNXAQ16473 311 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 PHLDA2Q53GA4 152 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 TMEM65Q6PI78 240 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 SSX9Q7RTT3 188 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 TMEM229BQ8NBD8 167 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 CASTOR1Q8WTX7 329 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 RABL2AQ9UBK7 228 aaPredicted RBP14.6□□□□□ -0.07
SHH-204ENST00000441114 RABL2BQ9UNT1 228 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 WNK1Q9H4A3 2382 aa14.6□□□□□ -0.07
SHH-204ENST00000441114 GPR31O00270 319 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 PGLYRP1O75594 196 aaPredicted RBP14.59□□□□□ -0.07
SHH-204ENST00000441114 RAB3DO95716 219 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 PF4P02776 101 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 C8orf86Q6ZUL3 223 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 CMTM1Q8IZ96 169 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 OR4D10Q8NGI6 311 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 SMIM4Q8WVI0 70 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 KLK15Q9H2R5 256 aa14.59□□□□□ -0.07
SHH-204ENST00000441114 DPPA5A6NC42 116 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 CTDSPLO15194 276 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 APELAP0DMC3 54 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 PGAM2P15259 253 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 PSMB8P28062 276 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 S100A5P33763 92 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 CRIP2P52943 208 aaPredicted RBP14.58□□□□□ -0.08
SHH-204ENST00000441114 SSBP2P81877 361 aaPredicted RBP14.58□□□□□ -0.08
SHH-204ENST00000441114 PRSS8Q16651 343 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 MRGPRG-AS1Q2M3A8 158 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 STEAP1BQ6NZ63 245 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 LPCAT3Q6P1A2 487 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 ZNF695Q8IW36 515 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 POC5Q8NA72 575 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 MINDY2Q8NBR6 621 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 PHB2Q99623 299 aa14.58□□□□□ -0.08
SHH-204ENST00000441114 ZNF430Q9H8G1 570 aaPredicted RBP14.58□□□□□ -0.08
SHH-204ENST00000441114 FOXA2Q9Y261 457 aaPredicted RBP14.58□□□□□ -0.08
SHH-204ENST00000441114 SOX15O60248 233 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 ACTL6BO94805 426 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 HRASP01112 189 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 IGLV1-40P01703 118 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 TBPP20226 339 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 SSBP1Q04837 148 aaKnown RBP14.57□□□□□ -0.08
SHH-204ENST00000441114 SCGB2B2Q4G0G5 96 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 C19orf54Q5BKX5 351 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 FAAP20Q6NZ36 180 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 OR5T1Q8NG75 326 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 RHOVQ96L33 236 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 MS4A10Q96PG2 267 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 DUX3Q96PT4 197 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 RSRP1Q9BUV0 290 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 TRRAPQ9Y4A5 3859 aa14.57□□□□□ -0.08
SHH-204ENST00000441114 PKD1L1Q8TDX9 2849 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 OR2A4O95047 310 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 HPRT1P00492 218 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 CD74P04233 296 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 RPA2P15927 270 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 S100GP29377 79 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 RAB9AP51151 201 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 PPP5CP53041 499 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 AKIRIN2Q53H80 203 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 PYDC2Q56P42 97 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 MMD2Q8IY49 270 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 SLC38A6Q8IZM9 456 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 ARRDC1Q8N5I2 433 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 RNF152Q8N8N0 203 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 DGCR14Q96DF8 476 aaKnown RBP14.56□□□□□ -0.08
SHH-204ENST00000441114 OR5B12Q96R08 314 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 OR2A7Q96R45 310 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 SOSTQ9BQB4 213 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 ZNF355PQ9NSJ1 428 aa14.56□□□□□ -0.08
SHH-204ENST00000441114 MSGN1A6NI15 193 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 RBFOX2O43251 390 aaKnown RBP eCLIP14.55□□□□□ -0.08
SHH-204ENST00000441114 GSTZ1O43708 216 aaPredicted RBP14.55□□□□□ -0.08
SHH-204ENST00000441114 CREBL2O60519 120 aaPredicted RBP14.55□□□□□ -0.08
SHH-204ENST00000441114 KBTBD11O94819 623 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 S1PR2O95136 353 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 PI3P19957 117 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 CD33P20138 364 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 LPAR6P43657 344 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 CDX1P47902 265 aaPredicted RBP14.55□□□□□ -0.08
SHH-204ENST00000441114 UCP3P55916 312 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 DEFB136Q30KP8 78 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 C10orf55Q5SWW7 151 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 TBC1D26Q86UD7 250 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 C1QL4Q86Z23 238 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 PUSL1Q8N0Z8 303 aaKnown RBP14.55□□□□□ -0.08
SHH-204ENST00000441114 TCTEX1D1Q8N7M0 179 aa14.55□□□□□ -0.08
SHH-204ENST00000441114 VSTM2AQ8TAG5 236 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms