RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 NUBP2Q9Y5Y2 271 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 ZNF701M0R085 212 aaPredicted RBP14.6□□□□□ -0.07
SHH-203ENST00000435425 RAMP3O60896 148 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 IGHG4P01861 327 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 RLN1P04808 185 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 ELANEP08246 267 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 PPIFP30405 207 aaKnown RBP14.6□□□□□ -0.07
SHH-203ENST00000435425 KIR2DS2P43631 304 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 TAS2R19P59542 299 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 MRPS10P82664 201 aaKnown RBP14.6□□□□□ -0.07
SHH-203ENST00000435425 TMEM267Q0VDI3 215 aaPredicted RBP14.6□□□□□ -0.07
SHH-203ENST00000435425 TNXAQ16473 311 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 PHLDA2Q53GA4 152 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 TMEM65Q6PI78 240 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 SSX9Q7RTT3 188 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 TMEM229BQ8NBD8 167 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 CASTOR1Q8WTX7 329 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 RABL2AQ9UBK7 228 aaPredicted RBP14.6□□□□□ -0.07
SHH-203ENST00000435425 RABL2BQ9UNT1 228 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 WNK1Q9H4A3 2382 aa14.6□□□□□ -0.07
SHH-203ENST00000435425 GPR31O00270 319 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 PGLYRP1O75594 196 aaPredicted RBP14.59□□□□□ -0.07
SHH-203ENST00000435425 RAB3DO95716 219 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 PF4P02776 101 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 C8orf86Q6ZUL3 223 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 CMTM1Q8IZ96 169 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 OR4D10Q8NGI6 311 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 SMIM4Q8WVI0 70 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 KLK15Q9H2R5 256 aa14.59□□□□□ -0.07
SHH-203ENST00000435425 DPPA5A6NC42 116 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 CTDSPLO15194 276 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 APELAP0DMC3 54 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 PGAM2P15259 253 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 PSMB8P28062 276 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 S100A5P33763 92 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 CRIP2P52943 208 aaPredicted RBP14.58□□□□□ -0.08
SHH-203ENST00000435425 SSBP2P81877 361 aaPredicted RBP14.58□□□□□ -0.08
SHH-203ENST00000435425 PRSS8Q16651 343 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 MRGPRG-AS1Q2M3A8 158 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 STEAP1BQ6NZ63 245 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 LPCAT3Q6P1A2 487 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 ZNF695Q8IW36 515 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 POC5Q8NA72 575 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 MINDY2Q8NBR6 621 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 PHB2Q99623 299 aa14.58□□□□□ -0.08
SHH-203ENST00000435425 ZNF430Q9H8G1 570 aaPredicted RBP14.58□□□□□ -0.08
SHH-203ENST00000435425 FOXA2Q9Y261 457 aaPredicted RBP14.58□□□□□ -0.08
SHH-203ENST00000435425 SOX15O60248 233 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 ACTL6BO94805 426 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 HRASP01112 189 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 IGLV1-40P01703 118 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 TBPP20226 339 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 SSBP1Q04837 148 aaKnown RBP14.57□□□□□ -0.08
SHH-203ENST00000435425 SCGB2B2Q4G0G5 96 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 C19orf54Q5BKX5 351 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 FAAP20Q6NZ36 180 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 OR5T1Q8NG75 326 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 RHOVQ96L33 236 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 MS4A10Q96PG2 267 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 DUX3Q96PT4 197 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 RSRP1Q9BUV0 290 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 TRRAPQ9Y4A5 3859 aa14.57□□□□□ -0.08
SHH-203ENST00000435425 PKD1L1Q8TDX9 2849 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 OR2A4O95047 310 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 HPRT1P00492 218 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 CD74P04233 296 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 RPA2P15927 270 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 S100GP29377 79 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 RAB9AP51151 201 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 PPP5CP53041 499 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 AKIRIN2Q53H80 203 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 PYDC2Q56P42 97 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 MMD2Q8IY49 270 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 SLC38A6Q8IZM9 456 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 ARRDC1Q8N5I2 433 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 RNF152Q8N8N0 203 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 DGCR14Q96DF8 476 aaKnown RBP14.56□□□□□ -0.08
SHH-203ENST00000435425 OR5B12Q96R08 314 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 OR2A7Q96R45 310 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 SOSTQ9BQB4 213 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 ZNF355PQ9NSJ1 428 aa14.56□□□□□ -0.08
SHH-203ENST00000435425 MSGN1A6NI15 193 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 RBFOX2O43251 390 aaKnown RBP eCLIP14.55□□□□□ -0.08
SHH-203ENST00000435425 GSTZ1O43708 216 aaPredicted RBP14.55□□□□□ -0.08
SHH-203ENST00000435425 CREBL2O60519 120 aaPredicted RBP14.55□□□□□ -0.08
SHH-203ENST00000435425 KBTBD11O94819 623 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 S1PR2O95136 353 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 PI3P19957 117 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 CD33P20138 364 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 LPAR6P43657 344 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 CDX1P47902 265 aaPredicted RBP14.55□□□□□ -0.08
SHH-203ENST00000435425 UCP3P55916 312 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 DEFB136Q30KP8 78 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 C10orf55Q5SWW7 151 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 TBC1D26Q86UD7 250 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 C1QL4Q86Z23 238 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 PUSL1Q8N0Z8 303 aaKnown RBP14.55□□□□□ -0.08
SHH-203ENST00000435425 TCTEX1D1Q8N7M0 179 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 VSTM2AQ8TAG5 236 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 SRSF12Q8WXF0 261 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms