RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 C17orf98A8MV24 154 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 SIRPB1O00241 398 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 HBZP02008 142 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 CCNOP22674 350 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 RPL29P47914 159 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 FOXG1P55316 489 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 LGALS4P56470 323 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 RELQ04864 619 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 RTP5Q14D33 572 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 GUSBP1Q15486 140 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 PLA2G2CQ5R387 149 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 TPTE2P1Q5T6R2 138 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 FAM78BQ5VT40 261 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 WDR73Q6P4I2 378 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 TREML4Q6UXN2 200 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 ACP7Q6ZNF0 438 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 MDP1Q86V88 176 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 OR10G8Q8NGN5 311 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM37Q8WXS4 190 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 LRFN3Q9BTN0 628 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 QTRT1Q9BXR0 403 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 CXXC4Q9H2H0 198 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 RAB9BQ9NP90 201 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 SIT1Q9Y3P8 196 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 KNL1Q8NG31 2342 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 A0A0U1RQK1 487 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF320A2RRD8 509 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 F2RL2O00254 374 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 GDF9O60383 454 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 PSPNO60542 156 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 OR4A8P0C604 315 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 CCL2P13500 99 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 OR3A1P47881 315 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 ABHD17BQ5VST6 288 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM251Q8N6I4 163 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 SGMS2Q8NHU3 365 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 GATAD1Q8WUU5 269 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 DDB2Q92466 427 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 MS4A10Q96PG2 267 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 OPN3Q9H1Y3 402 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 ARID1AO14497 2285 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 SDK2Q58EX2 2172 aa4.77□□□□□ -1.65
CCDC88A-203ENST00000412148 TRBV20OR9-2A0A075B6H5 130 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 A0A1W2PPV4 95 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 GFRA3O60609 400 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 NDUFB4O95168 129 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 IGKV3-15P01624 115 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 IL6RP08887 468 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 OTX2P32243 289 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 LINC00310P59036 64 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 RHOBP62745 196 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 PRR20EP86478 221 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 PRR20CP86479 221 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 PRR20DP86480 221 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 PRR20BP86481 221 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 PRR20AP86496 221 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 CYB5R2Q6BCY4 276 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 BATF2Q8N1L9 274 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 NECAP1Q8NC96 275 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 CMTM2Q8TAZ6 248 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 WIPF2Q8TF74 440 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM190Q8WZ59 177 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 NPVFQ9HCQ7 196 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 OBP2BQ9NPH6 170 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 OSTCQ9NRP0 149 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 TP53TG3Q9ULZ0 132 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 FOXA2Q9Y261 457 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 BRWD1Q9NSI6 2320 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 LAMA3Q16787 3333 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF705GA8MUZ8 300 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 A8MXE2 369 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 INS-IGF2F8WCM5 200 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 KLRC4-KLRK1H3BQV0 150 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 IGHV3-9P01782 118 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 ADMP35318 185 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM183BQ1AE95 376 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 SMIM21Q3B7S5 101 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 MBNL2Q5VZF2 373 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 MCEMP1Q8IX19 187 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 OR4B1Q8NGF8 309 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 NEUROG1Q92886 237 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 THOC3Q96J01 351 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 SLC35E1Q96K37 410 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 MGST2Q99735 147 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 LINC00574Q9H8X3 128 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF257Q9Y2Q1 563 aa4.76□□□□□ -1.65
CCDC88A-203ENST00000412148 LINC00473A8K010 186 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 SPINT2O43291 252 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 TNFRSF6BO95407 300 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 RPLP1P05386 114 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 SNRPCP09234 159 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 GCHFRP30047 84 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 GCH1P30793 250 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 MAGEA5P43359 124 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ATP5G3P48201 142 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 RELBQ01201 579 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 TLE1Q04724 770 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 FOXF2Q12947 444 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 PSG7Q13046 419 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 USF2Q15853 346 aaPredicted RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms