RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 SPINK4O60575 86 aa11.96□□□□□ -0.49
SHROOM1-203ENST00000378679 DKK1O94907 266 aa11.96□□□□□ -0.49
SHROOM1-203ENST00000378679 TMEM42Q69YG0 159 aa11.96□□□□□ -0.49
SHROOM1-203ENST00000378679 CSPG4Q6UVK1 2322 aa11.96□□□□□ -0.49
SHROOM1-203ENST00000378679 ZNF106Q9H2Y7 1883 aaKnown RBP11.96□□□□□ -0.49
SHROOM1-203ENST00000378679 PTBP3O95758 552 aaKnown RBP11.96□□□□□ -0.5
SHROOM1-203ENST00000378679 FBP1P09467 338 aa11.96□□□□□ -0.5
SHROOM1-203ENST00000378679 PMS2P11Q13670 270 aa11.96□□□□□ -0.5
SHROOM1-203ENST00000378679 RNASE6Q93091 150 aaKnown RBP11.96□□□□□ -0.5
SHROOM1-203ENST00000378679 PPP1R14DQ9NXH3 145 aa11.96□□□□□ -0.5
SHROOM1-203ENST00000378679 SLC25A15Q9Y619 301 aa11.96□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF729A6NN14 1252 aaPredicted RBP11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 TCAPO15273 167 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 CD8AP01732 235 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 TRGC2P03986 189 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 OR10J4P0C629 311 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 REG4Q9BYZ8 158 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 IGKV1D-13A0A0B4J2D9 117 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 RNF222A6NCQ9 220 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 TGOLN2O43493 480 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 IGKV1-13P0DP09 117 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 HKR1P10072 659 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 HLA-GP17693 338 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 NTF3P20783 257 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 ERVFRD-1P60508 538 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 MYPOPQ86VE0 399 aaPredicted RBP11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 PACRGQ96M98 296 aaPredicted RBP11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 AQP10Q96PS8 301 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 SPTBN4Q9H254 2564 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 PPIAL4CA0A0B4J2A2 164 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 GAPDHP04406 335 aaKnown RBP11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 PPIAL4GP0DN37 164 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 DLK1P80370 383 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF474Q6S9Z5 364 aaPredicted RBP11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 RPRMLQ8N4K4 120 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 SIRT7Q9NRC8 400 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 TMEM11P17152 192 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 VKORC1L1Q8N0U8 176 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 RNF138Q8WVD3 245 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 OR51B2Q9Y5P1 312 aa11.95□□□□□ -0.5
SHROOM1-203ENST00000378679 ADAMTS9Q9P2N4 1935 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 H3BQ15 152 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 RHOBP62745 196 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 ETFRF1Q6IPR1 90 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 ABHD12Q8N2K0 398 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 IL22RA2Q969J5 263 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF835Q9Y2P0 537 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 NCOA6Q14686 2063 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 ORM2P19652 201 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 UCP1P25874 307 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 RPL39P5Q59GN2 51 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 H1FOOQ8IZA3 346 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 RSG1Q9BU20 258 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 K7EQM0 130 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF737O75373 536 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 QRFPP83859 136 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF600Q6ZNG1 722 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 RARRES2Q99969 163 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF581Q9P0T4 197 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 VPS13AQ96RL7 3174 aa11.94□□□□□ -0.5
SHROOM1-203ENST00000378679 A0A0G2JNJ9 132 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 XKRY2A2RUG3 117 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 K7ENP7 123 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 F2RL2O00254 374 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 SPCS3P61009 180 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 RSPO1Q2MKA7 263 aaPredicted RBP11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 Q56UQ5 140 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 TOMM20LQ6UXN7 152 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 SH3BGRL3Q9H299 93 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 OR51M1Q9H341 326 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 TMEM140Q9NV12 185 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 C1RLQ9NZP8 487 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 Q9UFV3 132 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 RALYQ9UKM9 306 aaKnown RBP11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 TRBV6-7A0A0A0MS04 114 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF320A2RRD8 509 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 RBFOX3A6NFN3 312 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 MC5RP33032 325 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 CLEC2AQ6UVW9 174 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 CYB561D1Q8N8Q1 229 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 TMUB1Q9BVT8 246 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 TPPP3Q9BW30 176 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 THYN1Q9P016 225 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 PTPN13Q12923 2485 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 CLN5O75503 358 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 ZNF25P17030 456 aaPredicted RBP11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 TNFRSF9Q07011 255 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 FAM78BQ5VT40 261 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 OR9G1Q8NH87 305 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 GTF3AQ92664 365 aaKnown RBP11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 RBKSQ9H477 322 aa11.93□□□□□ -0.5
SHROOM1-203ENST00000378679 PITX3O75364 302 aa11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 PRR30Q53SZ7 412 aaPredicted RBP11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 SLC24A4Q8NFF2 622 aa11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 SLC25A17O43808 307 aa11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 CSN1S1P47710 185 aa11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 LY6G6FQ5SQ64 297 aa11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 WDR25Q64LD2 544 aaPredicted RBP11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 WDR31Q8NA23 367 aa11.92□□□□□ -0.5
SHROOM1-203ENST00000378679 ZG16O60844 167 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms