RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TERB2Q8NHR7 220 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 TRIM63Q969Q1 353 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 CITED2Q99967 270 aaPredicted RBP12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 GON7Q9BXV9 100 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 SRRQ9GZT4 340 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 WSB1Q9Y6I7 421 aa12.51□□□□□ -0.41
CCDC28A-201ENST00000332797 RBFOX2O43251 390 aaKnown RBP eCLIP12.5□□□□□ -0.41
CCDC28A-201ENST00000332797 PJVKQ0ZLH3 352 aa12.5□□□□□ -0.41
CCDC28A-201ENST00000332797 ECSCRQ19T08 205 aa12.5□□□□□ -0.41
CCDC28A-201ENST00000332797 TEX45Q8NA69 505 aa12.5□□□□□ -0.41
CCDC28A-201ENST00000332797 MCUBQ9NWR8 336 aa12.5□□□□□ -0.41
CCDC28A-201ENST00000332797 FBXO7Q9Y3I1 522 aa12.5□□□□□ -0.41
CCDC28A-201ENST00000332797 TET2Q6N021 2002 aaPredicted RBP12.5□□□□□ -0.41
CCDC28A-201ENST00000332797 M0QZ24 198 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 CNIH1O95406 144 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 PI3P19957 117 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 AP3S2P59780 193 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 KLF9Q13886 244 aaPredicted RBP12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 NSUN5P1Q3KNT7 163 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 TCTEX1D4Q5JR98 221 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 KHDC1LQ5JSQ8 128 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 ZNF562Q6V9R5 426 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 SSX9Q7RTT3 188 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 TBC1D26Q86UD7 250 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 TOMM5Q8N4H5 51 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 OR51S1Q8NGJ8 323 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 SGMS2Q8NHU3 365 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 GRPEL2Q8TAA5 225 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 MARCH1Q8TCQ1 289 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 CD300LFQ8TDQ1 290 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 ARPC1AQ92747 370 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 FAM103A1Q9BTL3 118 aaKnown RBP12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 SLC2A9Q9NRM0 540 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 ZNF580Q9UK33 172 aa12.49□□□□□ -0.41
CCDC28A-201ENST00000332797 TRAV41A0A0B4J266 112 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 A0A1W2PRX2 142 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 TCRBV4S1A1TA0A5B7 111 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 G3V318 75 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 ARPC1BO15143 372 aaKnown RBP12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 S1PR2O95136 353 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 HPRT1P00492 218 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 HRASP01112 189 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 F2RP25116 425 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 CD83Q01151 205 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 CFHR3Q02985 330 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 FXYD3Q14802 87 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 PRSS8Q16651 343 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 C2orf68Q2NKX9 166 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 OR13C8Q8NGS7 320 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 ZFAND1Q8TCF1 268 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 MRGPRFQ96AM1 343 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 ZNF486Q96H40 463 aaPredicted RBP12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 RHOVQ96L33 236 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 PRRT1Q99946 306 aa12.48□□□□□ -0.41
CCDC28A-201ENST00000332797 FAUP35544 74 aaKnown RBP12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 ECI1P42126 302 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 PIGPP57054 158 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 TAS2R31P59538 309 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 SSBP2P81877 361 aaPredicted RBP12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 TNXAQ16473 311 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 MRGPRG-AS1Q2M3A8 158 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 TRIQKQ629K1 86 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 ZNF57Q68EA5 555 aaPredicted RBP12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 TEX38Q6PEX7 206 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 LINC00299Q6ZSB3 139 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 NDUFA11Q86Y39 141 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 COMMD1Q8N668 190 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 GDPD1Q8N9F7 314 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 VSTM2AQ8TAG5 236 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 ZNF430Q9H8G1 570 aaPredicted RBP12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 PLEKHA2Q9HB19 425 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 SCP2D1Q9UJQ7 156 aa12.47□□□□□ -0.41
CCDC28A-201ENST00000332797 CREBL2O60519 120 aaPredicted RBP12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 KBTBD11O94819 623 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 OR2A4O95047 310 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 OPN1MWP04001 364 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 OPN1MW2P0DN77 364 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 OPN1MW3P0DN78 364 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 EGR2P11161 476 aaPredicted RBP12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 NQO2P16083 231 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 LPAR6P43657 344 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 INPP1P49441 399 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 RND3P61587 244 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 PUSL1Q8N0Z8 303 aaKnown RBP12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 TCTEX1D1Q8N7M0 179 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 OR2A7Q96R45 310 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 AIFM2Q9BRQ8 373 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 HRASLSQ9HDD0 168 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 SLC2A8Q9NY64 477 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 COMMD9Q9P000 198 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 COPZ2Q9P299 210 aa12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 C14orf166Q9Y224 244 aaKnown RBP12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 TSSC4Q9Y5U2 329 aaPredicted RBP12.46□□□□□ -0.41
CCDC28A-201ENST00000332797 A0A1W2PN81 502 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 MPPED1O15442 326 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 ACTL6BO94805 426 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 TSPAN15O95858 294 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 CTSDP07339 412 aaPredicted RBP12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 RPA2P15927 270 aa12.46□□□□□ -0.42
CCDC28A-201ENST00000332797 CHRNA7P36544 502 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms