RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 CD82P27701 267 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 FOXL1Q12952 345 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 OR5I1Q13606 314 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 ZNF766Q5HY98 468 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 VN1R17PQ8TDU5 208 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 C20orf144Q9BQM9 153 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 KMT2EQ8IZD2 1858 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 LINC00473A8K010 186 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 TEX43Q6ZNM6 134 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 HSPB9Q9BQS6 159 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 PATZ1Q9HBE1 687 aaKnown RBP11.22□□□□□ -0.61
SKA3-202ENST00000314759 LOXL2Q9Y4K0 774 aa11.22□□□□□ -0.61
SKA3-202ENST00000314759 WDFY4Q6ZS81 3184 aa11.21□□□□□ -0.61
SKA3-202ENST00000314759 URB1O60287 2271 aaKnown RBP11.21□□□□□ -0.61
SKA3-202ENST00000314759 TRBV20OR9-2A0A075B6H5 130 aa11.21□□□□□ -0.61
SKA3-202ENST00000314759 EDDM3BP56851 147 aa11.21□□□□□ -0.61
SKA3-202ENST00000314759 OR1C1Q15619 314 aa11.21□□□□□ -0.61
SKA3-202ENST00000314759 TMEM204Q9BSN7 226 aa11.21□□□□□ -0.61
SKA3-202ENST00000314759 WDR83OSQ9Y284 106 aa11.21□□□□□ -0.61
SKA3-202ENST00000314759 RNF114Q9Y508 228 aa11.21□□□□□ -0.61
SKA3-202ENST00000314759 MUC3AQ02505 3323 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 WNT9BO14905 357 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 SMPD2O60906 423 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 TFF1P04155 84 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 IL6RP08887 468 aaPredicted RBP11.21□□□□□ -0.62
SKA3-202ENST00000314759 FRMD6-AS1P0C7T7 363 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 LINC00614P0C842 121 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 CBLN1P23435 193 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 CD1BP29016 333 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 ABHD17BQ5VST6 288 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 SFRP2Q96HF1 295 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 ZDHHC11Q9H8X9 412 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 KCNIP2Q9NS61 270 aa11.21□□□□□ -0.62
SKA3-202ENST00000314759 SERF1AO75920 110 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 TBC1D28Q2M2D7 210 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 TMEM249Q2WGJ8 235 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 Q6ZR03 302 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 MRGPRDQ8TDS7 321 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 QTRT1Q9BXR0 403 aaKnown RBP11.2□□□□□ -0.62
SKA3-202ENST00000314759 MSL2Q9HCI7 577 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 OOEPA6NGQ2 149 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 THBS3P49746 956 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 UBE2NP61088 152 aaKnown RBP11.2□□□□□ -0.62
SKA3-202ENST00000314759 FBXW9Q5XUX1 488 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 ZNF826PQ6ZT77 177 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 CXorf67Q86X51 503 aaPredicted RBP11.2□□□□□ -0.62
SKA3-202ENST00000314759 RAB1CQ92928 201 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 NINJ1Q92982 152 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 COQ2Q96H96 371 aa11.2□□□□□ -0.62
SKA3-202ENST00000314759 A0A1W2PPV4 95 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 COMPP49747 757 aaPredicted RBP11.19□□□□□ -0.62
SKA3-202ENST00000314759 NANOS1Q8WY41 292 aaKnown RBP11.19□□□□□ -0.62
SKA3-202ENST00000314759 HES4Q9HCC6 221 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 IGHV3-43A0A0B4J1X8 118 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 TCF21O43680 179 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 WISP2O76076 250 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 IGHV3-43DP0DP04 118 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 COL8A2P25067 703 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 SSTR5P35346 364 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 PLGLB1Q02325 96 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 TRIP6Q15654 476 aaKnown RBP11.19□□□□□ -0.62
SKA3-202ENST00000314759 SLC35E4Q6ICL7 350 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 LINC00696Q6ZRV3 163 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 TMEM105Q8N8V8 129 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 DEFB108AA8MXU0 73 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 SIAH2O43255 324 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 CRYABP02511 175 aaKnown RBP11.19□□□□□ -0.62
SKA3-202ENST00000314759 OR9G9P0C7N8 305 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 GABRA2P47869 451 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 PSG7Q13046 419 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 TPRX1Q8N7U7 411 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 SLC25A40Q8TBP6 338 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 BTF3L4Q96K17 158 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 TAAR6Q96RI8 345 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 VAMP8Q9BV40 100 aa11.19□□□□□ -0.62
SKA3-202ENST00000314759 NBEAQ8NFP9 2946 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 F6UZH7 168 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 ARL14EPLP0DKL9 152 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 TPPP2P59282 170 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 YPEL3P61236 119 aaPredicted RBP11.18□□□□□ -0.62
SKA3-202ENST00000314759 RFESDQ8TAC1 157 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 MMDQ15546 238 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 TMEM183BQ1AE95 376 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 C11orf53Q8IXP5 236 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 TCTEX1D1Q8N7M0 179 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 PSG11Q9UQ72 335 aa11.18□□□□□ -0.62
SKA3-202ENST00000314759 MED13Q9UHV7 2174 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 TREML4Q6UXN2 200 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 OCC1Q8TAD7 63 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 DNAJC4Q9NNZ3 241 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 MDFIC2A0A1B0GVS7 189 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 SCO2A0A1W2PP80 73 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 IQCF6A8MYZ5 107 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 J3QW42 95 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 SLC17A3O00476 420 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 KITLGP21583 273 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 RAB7AP51149 207 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 SELENOTP62341 195 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 FOXF2Q12947 444 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 MRPL52Q86TS9 123 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms