RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 C11orf44Q8N8P7 122 aa10.06□□□□□ -0.8
SS18-202ENST00000269138 ZFAND1Q8TCF1 268 aa10.06□□□□□ -0.8
SS18-202ENST00000269138 RTBDNQ9BSG5 229 aaPredicted RBP10.06□□□□□ -0.8
SS18-202ENST00000269138 SLC2A8Q9NY64 477 aa10.06□□□□□ -0.8
SS18-202ENST00000269138 MPPED1O15442 326 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 RBFOX2O43251 390 aaKnown RBP eCLIP10.05□□□□□ -0.8
SS18-202ENST00000269138 S1PR2O95136 353 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 CA2P00918 260 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 CTSDP07339 412 aaPredicted RBP10.05□□□□□ -0.8
SS18-202ENST00000269138 SAA1P0DJI8 122 aaPredicted RBP10.05□□□□□ -0.8
SS18-202ENST00000269138 RPA2P15927 270 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 F2RP25116 425 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 LPAR6P43657 344 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 RND3P61587 244 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 SSBP2P81877 361 aaPredicted RBP10.05□□□□□ -0.8
SS18-202ENST00000269138 VMA21Q3ZAQ7 101 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 SSX9Q7RTT3 188 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 CENPVQ7Z7K6 275 aaPredicted RBP10.05□□□□□ -0.8
SS18-202ENST00000269138 ZNF329Q86UD4 541 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 PPP1R27Q86WC6 154 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 OR51J1Q9H342 316 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 C5orf66Q9H5L9 145 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 PARP11Q9NR21 331 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 SCP2D1Q9UJQ7 156 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 GPR132Q9UNW8 380 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 VSIG4Q9Y279 399 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 FBXO7Q9Y3I1 522 aa10.05□□□□□ -0.8
SS18-202ENST00000269138 ARPC1BO15143 372 aaKnown RBP10.04□□□□□ -0.8
SS18-202ENST00000269138 ATP6V0E1O15342 81 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 KCNAB3O43448 404 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 CD28P10747 220 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 EGR2P11161 476 aaPredicted RBP10.04□□□□□ -0.8
SS18-202ENST00000269138 S100GP29377 79 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 FAUP35544 74 aaKnown RBP10.04□□□□□ -0.8
SS18-202ENST00000269138 INPP1P49441 399 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 FOXRED2Q8IWF2 684 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 STPG2Q8N412 459 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 TEX45Q8NA69 505 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 POC5Q8NA72 575 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 OR5AU1Q8NGC0 362 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 S100ZQ8WXG8 99 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 ZNF486Q96H40 463 aaPredicted RBP10.04□□□□□ -0.8
SS18-202ENST00000269138 RHOVQ96L33 236 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 CITED1Q99966 193 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 WSB1Q9Y6I7 421 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 PLXNB1O43157 2135 aa10.04□□□□□ -0.8
SS18-202ENST00000269138 G3V318 75 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 AP4M1O00189 453 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 HPRT1P00492 218 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 HRASP01112 189 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 GNB1P62873 340 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 SURF2Q15527 256 aaPredicted RBP10.03□□□□□ -0.8
SS18-202ENST00000269138 PRSS8Q16651 343 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 TCTEX1D4Q5JR98 221 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 SHISA2Q6UWI4 295 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 ZNF562Q6V9R5 426 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 PUSL1Q8N0Z8 303 aaKnown RBP10.03□□□□□ -0.8
SS18-202ENST00000269138 ADAD2Q8NCV1 583 aaKnown RBP10.03□□□□□ -0.8
SS18-202ENST00000269138 CD300LFQ8TDQ1 290 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 FAM103A1Q9BTL3 118 aaKnown RBP10.03□□□□□ -0.8
SS18-202ENST00000269138 ZNF430Q9H8G1 570 aaPredicted RBP10.03□□□□□ -0.8
SS18-202ENST00000269138 COPZ2Q9P299 210 aa10.03□□□□□ -0.8
SS18-202ENST00000269138 C14orf166Q9Y224 244 aaKnown RBP10.03□□□□□ -0.8
SS18-202ENST00000269138 PSMB11A5LHX3 300 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 PLA2G10O15496 165 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 OR2A4O95047 310 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 IGKV1-39P01597 117 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 IGKV1D-39P04432 117 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 IGF1P05019 195 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 ECI1P42126 302 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 CCR6P51684 374 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 TAS2R31P59538 309 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 FXYD3Q14802 87 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 SP6Q3SY56 376 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 GRPEL2Q8TAA5 225 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 ABHD5Q8WTS1 349 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 CHPT1Q8WUD6 406 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 DEDD2Q8WXF8 326 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 R3HDM4Q96D70 268 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 OR2A7Q96R45 310 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 TP53RKQ96S44 253 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 PLEKHA2Q9HB19 425 aa10.02□□□□□ -0.8
SS18-202ENST00000269138 TRAV3A0A0B4J244 114 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 C3orf85A0A1B0GTC6 90 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 FBXO24O75426 580 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 CNIH1O95406 144 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 MYOD1P15172 320 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 NQO2P16083 231 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 CFHR3Q02985 330 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 ZNF846Q147U1 533 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 POU2AF1Q16633 256 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 OR4A47Q6IF82 309 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 TCTEX1D1Q8N7M0 179 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 CCDC71LQ8N9Z2 235 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 TMEM167AQ8TBQ9 72 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 TMEM230Q96A57 120 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 CCDC32Q9BV29 185 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 COMMD9Q9P000 198 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 NUBP2Q9Y5Y2 271 aa10.02□□□□□ -0.81
SS18-202ENST00000269138 DNHD1Q96M86 4753 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms