RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W COX11P19516 300 aaKnown RBP3.96□□□□□ -1.78
UPF3YGR072W RNR1P21524 888 aaKnown RBP3.96□□□□□ -1.78
UPF3YGR072W SEC65P29478 273 aa3.96□□□□□ -1.78
UPF3YGR072W MNN4P36044 1178 aa3.96□□□□□ -1.78
UPF3YGR072W VPS24P36095 224 aaKnown RBP3.96□□□□□ -1.78
UPF3YGR072W RNR4P49723 345 aaKnown RBP3.96□□□□□ -1.78
UPF3YGR072W PAP2P53632 584 aaKnown RBP3.96□□□□□ -1.78
UPF3YGR072W APM4Q99186 491 aa3.96□□□□□ -1.78
UPF3YGR072W Q0142Q9ZZW4 58 aa3.96□□□□□ -1.78
UPF3YGR072W PGK1P00560 416 aaKnown RBP3.95□□□□□ -1.78
UPF3YGR072W RPA135P22138 1203 aaKnown RBP3.95□□□□□ -1.78
UPF3YGR072W KCC4P25389 1037 aa3.95□□□□□ -1.78
UPF3YGR072W PTP2P29461 750 aa3.95□□□□□ -1.78
UPF3YGR072W HEM12P32347 362 aaPredicted RBP3.95□□□□□ -1.78
UPF3YGR072W PMC1P38929 1173 aaPredicted RBP3.95□□□□□ -1.78
UPF3YGR072W YJR039WP47107 1121 aa3.95□□□□□ -1.78
UPF3YGR072W PIP2P52960 996 aa3.95□□□□□ -1.78
UPF3YGR072W YNL034WP53963 612 aa3.95□□□□□ -1.78
UPF3YGR072W YNL018CP53976 612 aa3.95□□□□□ -1.78
UPF3YGR072W TGL2P54857 326 aa3.95□□□□□ -1.78
UPF3YGR072W REC102Q02721 264 aa3.95□□□□□ -1.78
UPF3YGR072W PEX15Q08215 383 aa3.95□□□□□ -1.78
UPF3YGR072W RRP6Q12149 733 aaKnown RBP3.95□□□□□ -1.78
UPF3YGR072W STE12P13574 688 aa3.94□□□□□ -1.78
UPF3YGR072W PEX1P24004 1043 aa3.94□□□□□ -1.78
UPF3YGR072W DAL3P32459 195 aa3.94□□□□□ -1.78
UPF3YGR072W YKU70P32807 602 aa3.94□□□□□ -1.78
UPF3YGR072W PTH2P34222 208 aa3.94□□□□□ -1.78
UPF3YGR072W OAF3P36023 863 aa3.94□□□□□ -1.78
UPF3YGR072W APN2P38207 520 aa3.94□□□□□ -1.78
UPF3YGR072W SSZ1P38788 538 aaKnown RBP3.94□□□□□ -1.78
UPF3YGR072W HXT6P39003 570 aaKnown RBP3.94□□□□□ -1.78
UPF3YGR072W HXT7P39004 570 aa3.94□□□□□ -1.78
UPF3YGR072W HOL1P53389 586 aa3.94□□□□□ -1.78
UPF3YGR072W MET14Q02196 202 aa3.94□□□□□ -1.78
UPF3YGR072W FMP30Q02883 468 aa3.94□□□□□ -1.78
UPF3YGR072W MLC2Q06580 163 aa3.94□□□□□ -1.78
UPF3YGR072W DCS2Q12123 353 aa3.94□□□□□ -1.78
UPF3YGR072W RPS21AP0C0V8 87 aaKnown RBP3.93□□□□□ -1.78
UPF3YGR072W YMC2P38087 329 aa3.93□□□□□ -1.78
UPF3YGR072W SET2P46995 733 aaKnown RBP3.93□□□□□ -1.78
UPF3YGR072W ENP2P48234 707 aaKnown RBP3.93□□□□□ -1.78
UPF3YGR072W YGR151CP53287 111 aa3.93□□□□□ -1.78
UPF3YGR072W SPC98P53540 846 aa3.93□□□□□ -1.78
UPF3YGR072W UBX4P54730 416 aa3.93□□□□□ -1.78
UPF3YGR072W VPS72Q03388 795 aa3.93□□□□□ -1.78
UPF3YGR072W YMR210WQ03649 449 aa3.93□□□□□ -1.78
UPF3YGR072W ATG16Q03818 150 aa3.93□□□□□ -1.78
UPF3YGR072W RPS21BQ3E754 87 aaKnown RBP3.93□□□□□ -1.78
UPF3YGR072W GAL1P04385 528 aa3.92□□□□□ -1.78
UPF3YGR072W SWI6P09959 803 aa3.92□□□□□ -1.78
UPF3YGR072W NUP1P20676 1076 aa3.92□□□□□ -1.78
UPF3YGR072W SAT4P25333 603 aaKnown RBP3.92□□□□□ -1.78
UPF3YGR072W YHR202WP38887 602 aa3.92□□□□□ -1.78
UPF3YGR072W NAB3P38996 802 aaKnown RBP RIP-Chip data3.92□□□□□ -1.78not detected
UPF3YGR072W NOP56Q12460 504 aaKnown RBP RIP-Chip data3.92□□□□□ -1.78not detected
UPF3YGR072W PGI1P12709 554 aaKnown RBP3.91□□□□□ -1.78
UPF3YGR072W ABF1P14164 731 aa3.91□□□□□ -1.78
UPF3YGR072W DGR2P32330 852 aa3.91□□□□□ -1.78
UPF3YGR072W UGP1P32861 499 aaKnown RBP3.91□□□□□ -1.78
UPF3YGR072W AKL1P38080 1108 aaKnown RBP3.91□□□□□ -1.78
UPF3YGR072W KSP1P38691 1029 aaKnown RBP3.91□□□□□ -1.78
UPF3YGR072W BEM4P39011 633 aa3.91□□□□□ -1.78
UPF3YGR072W MIT1P40002 666 aa3.91□□□□□ -1.78
UPF3YGR072W GID8P40208 455 aa3.91□□□□□ -1.78
UPF3YGR072W MEP2P41948 499 aa3.91□□□□□ -1.78
UPF3YGR072W NOP9P47077 666 aaKnown RBP3.91□□□□□ -1.78
UPF3YGR072W YGR021WP53212 290 aa3.91□□□□□ -1.78
UPF3YGR072W BRE5P53741 515 aaKnown RBP3.91□□□□□ -1.78
UPF3YGR072W BMS1Q08965 1183 aaKnown RBP3.91□□□□□ -1.78
UPF3YGR072W ECM3Q99252 613 aa3.91□□□□□ -1.78
UPF3YGR072W PHO5P00635 467 aa3.9□□□□□ -1.79
UPF3YGR072W ADE5,7P07244 802 aaKnown RBP3.9□□□□□ -1.79
UPF3YGR072W PHO81P17442 1178 aa3.9□□□□□ -1.79
UPF3YGR072W TRX2P22803 104 aaKnown RBP3.9□□□□□ -1.79
UPF3YGR072W YMC1P32331 307 aa3.9□□□□□ -1.79
UPF3YGR072W BCS1P32839 456 aa3.9□□□□□ -1.79
UPF3YGR072W MRS6P32864 603 aaKnown RBP3.9□□□□□ -1.79
UPF3YGR072W DUN1P39009 513 aa3.9□□□□□ -1.79
UPF3YGR072W HIS6P40545 261 aa3.9□□□□□ -1.79
UPF3YGR072W CNM67P53865 581 aaKnown RBP3.9□□□□□ -1.79
UPF3YGR072W NOP15P53927 220 aaPredicted RBP3.9□□□□□ -1.79
UPF3YGR072W ARP4P80428 489 aa3.9□□□□□ -1.79
UPF3YGR072W ECM16Q04217 1267 aaKnown RBP3.9□□□□□ -1.79
UPF3YGR072W YLR407WQ06070 228 aa3.9□□□□□ -1.79
UPF3YGR072W THI22Q06490 572 aa3.9□□□□□ -1.79
UPF3YGR072W VHS3Q08438 674 aa3.9□□□□□ -1.79
UPF3YGR072W RPS17AP02407 136 aaKnown RBP3.89□□□□□ -1.79
UPF3YGR072W RPS17BP14127 136 aaKnown RBP3.89□□□□□ -1.79
UPF3YGR072W APN1P22936 367 aa3.89□□□□□ -1.79
UPF3YGR072W SDS22P36047 338 aa3.89□□□□□ -1.79
UPF3YGR072W FUI1P38196 639 aa3.89□□□□□ -1.79
UPF3YGR072W FAT1P38225 669 aa3.89□□□□□ -1.79
UPF3YGR072W SRP68P38687 599 aaKnown RBP3.89□□□□□ -1.79
UPF3YGR072W YHR097CP38809 366 aaKnown RBP3.89□□□□□ -1.79
UPF3YGR072W SAW1P39735 261 aa3.89□□□□□ -1.79
UPF3YGR072W PIG2P40187 538 aa3.89□□□□□ -1.79
UPF3YGR072W RSC8P43609 557 aaKnown RBP3.89□□□□□ -1.79
UPF3YGR072W COX18P53239 316 aa3.89□□□□□ -1.79
UPF3YGR072W YDL086WQ07505 273 aa3.89□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 19.9 ms