RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIC96	YFR002W	RKI1	Q12189	258 aa		3.13	□□□□□ -1.91
NIC96	YFR002W	PHO5	P00635	467 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	KCC4	P25389	1037 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	MRK1	P50873	501 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	ECM9	Q02202	377 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	IZH3	Q07959	543 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	YNL162W-A	Q3E7A8	72 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	LAM4	P38800	1345 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	TY1B-BR	Q12193	1756 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	TY1B-GR3	Q12316	1755 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	TY1B-OR	Q92393	1755 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	DOP1	Q03921	1698 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	RPS9B	P05755	195 aa	Known RBP	3.12	□□□□□ -1.91
NIC96	YFR002W	YGR153W	P48238	217 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	GPG1	P53130	126 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	SPC98	P53540	846 aa		3.12	□□□□□ -1.91
NIC96	YFR002W	NOP15	P53927	220 aa	Predicted RBP	3.12	□□□□□ -1.91
NIC96	YFR002W	UFD4	P33202	1483 aa		3.11	□□□□□ -1.91
NIC96	YFR002W	RPS17A	P02407	136 aa	Known RBP	3.11	□□□□□ -1.91
NIC96	YFR002W	RPS17B	P14127	136 aa	Known RBP	3.11	□□□□□ -1.91
NIC96	YFR002W	SEC15	P22224	910 aa		3.11	□□□□□ -1.91
NIC96	YFR002W	NTH1	P32356	751 aa		3.11	□□□□□ -1.91
NIC96	YFR002W	IES1	P43579	692 aa		3.11	□□□□□ -1.91
NIC96	YFR002W	BFA1	P47113	574 aa		3.11	□□□□□ -1.91
NIC96	YFR002W	DIP5	P53388	608 aa		3.11	□□□□□ -1.91
NIC96	YFR002W	YNR029C	P53729	429 aa	Known RBP	3.11	□□□□□ -1.91
NIC96	YFR002W	NUP170	P38181	1502 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	STE12	P13574	688 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	SEC65	P29478	273 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	OAF3	P36023	863 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	ELF1	P36053	145 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	APL3	P38065	1025 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	PXA1	P41909	870 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	PMT6	P42934	759 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	GZF3	P42944	551 aa	Known RBP	3.1	□□□□□ -1.91
NIC96	YFR002W	THI7	Q05998	598 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	TRM732	Q03496	1420 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	PRP22	P24384	1145 aa	Known RBP	3.1	□□□□□ -1.91
NIC96	YFR002W	PRE4	P30657	266 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	FAT1	P38225	669 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	ASN1	P49089	572 aa	Known RBP	3.1	□□□□□ -1.91
NIC96	YFR002W	UME1	Q03010	460 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	YDR179W-A	Q03983	463 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	UFO1	Q04511	668 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	HFI1	Q12060	488 aa		3.1	□□□□□ -1.91
NIC96	YFR002W	RPS21A	P0C0V8	87 aa	Known RBP	3.09	□□□□□ -1.91
NIC96	YFR002W	GLN4	P13188	809 aa	Known RBP	3.09	□□□□□ -1.91
NIC96	YFR002W	OAF1	P39720	1047 aa	Predicted RBP	3.09	□□□□□ -1.91
NIC96	YFR002W	SPO1	P53541	631 aa		3.09	□□□□□ -1.91
NIC96	YFR002W	MRI1	Q06489	411 aa	Known RBP	3.09	□□□□□ -1.91
NIC96	YFR002W	OSW1	Q08692	278 aa		3.09	□□□□□ -1.91
NIC96	YFR002W	APM4	Q99186	491 aa		3.09	□□□□□ -1.91
NIC96	YFR002W	SCC2	Q04002	1493 aa		3.09	□□□□□ -1.92
NIC96	YFR002W	MDM10	P18409	493 aa		3.09	□□□□□ -1.92
NIC96	YFR002W	CDS1	P38221	457 aa		3.09	□□□□□ -1.92
NIC96	YFR002W	CRG1	P38892	291 aa	RIP-Chip data	3.09	□□□□□ -1.92	not detected
NIC96	YFR002W	PMC1	P38929	1173 aa	Predicted RBP	3.09	□□□□□ -1.92
NIC96	YFR002W	PMT3	P47190	753 aa		3.09	□□□□□ -1.92
NIC96	YFR002W	CDC26	P14724	124 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	STE4	P18851	423 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	VPS34	P22543	875 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	SAT4	P25333	603 aa	Known RBP	3.08	□□□□□ -1.92
NIC96	YFR002W	TMN3	P40071	706 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	GPP1	P41277	250 aa	Known RBP	3.08	□□□□□ -1.92
NIC96	YFR002W	TAF4	P50105	388 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	YHM2	Q04013	314 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	YTM1	Q12024	460 aa	Predicted RBP	3.08	□□□□□ -1.92
NIC96	YFR002W	SPO14	P36126	1683 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	SKI3	P17883	1432 aa	Known RBP	3.08	□□□□□ -1.92
NIC96	YFR002W	NUP145	P49687	1317 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	TUP1	P16649	713 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	YMC1	P32331	307 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	DUN1	P39009	513 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	FTR1	P40088	404 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	MNN11	P46985	422 aa	Known RBP	3.08	□□□□□ -1.92
NIC96	YFR002W	TIM50	Q02776	476 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	FDC1	Q03034	503 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	NSE5	Q03718	556 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	PPN1	Q04119	674 aa		3.08	□□□□□ -1.92
NIC96	YFR002W	TPK2	P06245	380 aa		3.07	□□□□□ -1.92
NIC96	YFR002W	MTC7	P32633	139 aa		3.07	□□□□□ -1.92
NIC96	YFR002W	HFD1	Q04458	532 aa		3.07	□□□□□ -1.92
NIC96	YFR002W	MDM20	Q12387	796 aa	Known RBP	3.07	□□□□□ -1.92
NIC96	YFR002W	YGR161W-C	Q3E744	92 aa		3.07	□□□□□ -1.92
NIC96	YFR002W	RPA135	P22138	1203 aa	Known RBP	3.07	□□□□□ -1.92
NIC96	YFR002W	UGP1	P32861	499 aa	Known RBP	3.07	□□□□□ -1.92
NIC96	YFR002W	FPR3	P38911	411 aa	Known RBP	3.07	□□□□□ -1.92
NIC96	YFR002W	PRM2	P40534	656 aa		3.07	□□□□□ -1.92
NIC96	YFR002W	VID28	P40547	921 aa		3.07	□□□□□ -1.92
NIC96	YFR002W	NGL2	Q03264	515 aa	Known RBP	3.07	□□□□□ -1.92
NIC96	YFR002W	YRF1-1	P0CX20	1796 aa		3.06	□□□□□ -1.92
NIC96	YFR002W	YRF1-5	P0CX21	1796 aa		3.06	□□□□□ -1.92
NIC96	YFR002W	YRF1-8	P0CX22	1796 aa		3.06	□□□□□ -1.92
NIC96	YFR002W	HOM2	P13663	365 aa	Known RBP	3.06	□□□□□ -1.92
NIC96	YFR002W	MF(ALPHA)2	P32435	120 aa		3.06	□□□□□ -1.92
NIC96	YFR002W	MRPL7	P36519	292 aa		3.06	□□□□□ -1.92
NIC96	YFR002W	YGL117W	P53133	265 aa		3.06	□□□□□ -1.92
NIC96	YFR002W	LEU2	P04173	364 aa	Predicted RBP	3.05	□□□□□ -1.92
NIC96	YFR002W	ORC2	P32833	620 aa		3.05	□□□□□ -1.92
NIC96	YFR002W	DID4	P36108	232 aa		3.05	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 23 ms