RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PPIP5K1Q6PFW1 1433 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 METTL13Q8N6R0 699 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 PLCH2O75038 1416 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 EPB41P11171 864 aaKnown RBP6.9□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC65Q8IXS2 484 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 TBC1D22AQ8WUA7 517 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 TEKT1Q969V4 418 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 ZBED2Q9BTP6 218 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 JADE2Q9NQC1 790 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 STIM2Q9P246 746 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 EIF2AK4Q9P2K8 1649 aaKnown RBP6.9□□□□□ -1.31
SCN1A-217ENST00000637988 ESYT2A0FGR8 921 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 PSMA7O14818 248 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 KRT10P13645 584 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 XPAP23025 273 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-217ENST00000637988 HAUS3Q68CZ6 603 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 RAB11FIP4Q86YS3 637 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 ANO3Q9BYT9 981 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 KDM5BQ9UGL1 1544 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 TRAK2O60296 914 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 HARSP12081 509 aaKnown RBP6.9□□□□□ -1.31
SCN1A-217ENST00000637988 MCF2L2Q86YR7 1114 aa6.9□□□□□ -1.31
SCN1A-217ENST00000637988 GJC1P36383 396 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 YARSP54577 528 aaKnown RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 GUCY1B3Q02153 619 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 CCDC102BQ68D86 513 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 MED10Q9BTT4 135 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ECHDC1Q9NTX5 307 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 FAM184BQ9ULE4 1060 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ABL1P00519 1130 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 RPS6KC1Q96S38 1066 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 SMC6Q96SB8 1091 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ATP6V0A2Q9Y487 856 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 GRIN2AQ12879 1464 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ASIC1P78348 528 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 INF2Q27J81 1249 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 KIAA1841Q6NSI8 718 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 UBXN4Q92575 508 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 NSRP1Q9H0G5 558 aaKnown RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 FAM204AQ9H8W3 233 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 RAPGEF6Q8TEU7 1601 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 KIF1BO60333 1816 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 LIN9Q5TKA1 542 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 MPNDQ8N594 471 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 DCAF5Q96JK2 942 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 PAGR1Q9BTK6 254 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 SNRKQ9NRH2 765 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 IQSEC3Q9UPP2 1182 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 YEATS2Q9ULM3 1422 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 CDK13Q14004 1512 aaKnown RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ARHGEF37A1IGU5 675 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ARHGEF16Q5VV41 709 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 FBXO31Q5XUX0 539 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ELMOD1Q8N336 334 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 FAM8A1Q9UBU6 413 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 CCDC171Q6TFL3 1326 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 HAND2P61296 217 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 SUPT20HL1Q3ZLR7 823 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 NEK1Q96PY6 1258 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 SPDYE16A6NNV3 312 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 TMEM110-MUSTN1A8MSY1 372 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 CAMK4Q16566 473 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 SPDYE2Q495Y8 402 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 CNKSR1Q969H4 720 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 PAIP2Q9BPZ3 127 aaKnown RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 TRIM7Q9C029 511 aa6.89□□□□□ -1.31
SCN1A-217ENST00000637988 ZSCAN16Q9H4T2 348 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-217ENST00000637988 CYLC1P35663 651 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 STX1AQ16623 288 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 NLRX1Q86UT6 975 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 TTC14Q96N46 770 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 TPCN1Q9ULQ1 816 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 UNC13AQ9UPW8 1703 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 CALUO43852 315 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 RNF169Q8NCN4 708 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 ADPGKQ9BRR6 497 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 QTRT2Q9H974 415 aaKnown RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 AFG3L2Q9Y4W6 797 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 RIMS2Q9UQ26 1411 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 NOL3O60936 208 aaKnown RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 RNASELQ05823 741 aaKnown RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 SLC9C2Q5TAH2 1124 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 DTHD1Q6ZMT9 781 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 PPP2R3CQ969Q6 453 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 RAB3IPQ96QF0 476 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 TMEM106CQ9BVX2 250 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 MLXIPQ9HAP2 919 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 SERPINA10Q9UK55 444 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 TRPC6Q9Y210 931 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 F8W8V4 182 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 NFKBIAP25963 317 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 HSPA2P54652 639 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 GLG1Q92896 1179 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 EPSTI1Q96J88 318 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 LIMCH1Q9UPQ0 1083 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 TIAM1Q13009 1591 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 GRM8O00222 908 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 PPANQ9NQ55 473 aaKnown RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms