RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SUGT1Q9Y2Z0 365 aa12.6□□□□□ -0.39
CLN3-248ENST00000636355 CYP21A2P08686 494 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 KLRK1P26718 216 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 DDIT3P35638 169 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 NT5C2P49902 561 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 BLOC1S2Q6QNY1 142 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 FBXL16Q8N461 479 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 EYA3Q99504 573 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 CWC22Q9HCG8 908 aaKnown RBP12.59□□□□□ -0.39
CLN3-248ENST00000636355 SH2B1Q9NRF2 756 aaPredicted RBP12.59□□□□□ -0.39
CLN3-248ENST00000636355 NSFL1CQ9UNZ2 370 aaKnown RBP12.59□□□□□ -0.39
CLN3-248ENST00000636355 FAM205AQ6ZU69 1335 aa12.59□□□□□ -0.39
CLN3-248ENST00000636355 FOXP2O15409 715 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 RPS6KB1P23443 525 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 GSTO1P78417 241 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 CUL4AQ13619 759 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 GIMAP6Q6P9H5 292 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 MPNDQ8N594 471 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 ZSCAN31Q96LW9 406 aaPredicted RBP12.58□□□□□ -0.4
CLN3-248ENST00000636355 STRBPQ96SI9 672 aaKnown RBP12.58□□□□□ -0.4
CLN3-248ENST00000636355 RTFDC1Q9BY42 306 aaPredicted RBP12.58□□□□□ -0.4
CLN3-248ENST00000636355 UPF3BQ9BZI7 483 aaKnown RBP12.58□□□□□ -0.4
CLN3-248ENST00000636355 NACAP1Q9BZK3 213 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 MTFR1LQ9H019 292 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 CHMP5Q9NZZ3 219 aa12.58□□□□□ -0.4
CLN3-248ENST00000636355 MBD4O95243 580 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 CHGBP05060 677 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 PCP11498 1178 aaKnown RBP12.57□□□□□ -0.4
CLN3-248ENST00000636355 SOGA3Q5TF21 947 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 NAA16Q6N069 864 aaPredicted RBP12.57□□□□□ -0.4
CLN3-248ENST00000636355 DPP8Q6V1X1 898 aaPredicted RBP12.57□□□□□ -0.4
CLN3-248ENST00000636355 TXNRD3Q86VQ6 643 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 SLF2Q8IX21 1173 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 SUPT20HQ8NEM7 779 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 NSUN4Q96CB9 384 aaKnown RBP12.57□□□□□ -0.4
CLN3-248ENST00000636355 CHMP4CQ96CF2 233 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 TMX3Q96JJ7 454 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 NEK1Q96PY6 1258 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 CD209Q9NNX6 404 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 PDRG1Q9NUG6 133 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 RAI14Q9P0K7 980 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 ABCF2Q9UG63 623 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 LIMCH1Q9UPQ0 1083 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 ARFGEF1Q9Y6D6 1849 aa12.57□□□□□ -0.4
CLN3-248ENST00000636355 BAZ2AQ9UIF9 1905 aaKnown RBP12.56□□□□□ -0.4
CLN3-248ENST00000636355 ECM29Q5VYK3 1845 aa12.56□□□□□ -0.4
CLN3-248ENST00000636355 MAGEB6P1A0A0J9YX57 407 aa12.56□□□□□ -0.4
CLN3-248ENST00000636355 PDIA4P13667 645 aaKnown RBP12.56□□□□□ -0.4
CLN3-248ENST00000636355 CYP7A1P22680 504 aa12.56□□□□□ -0.4
CLN3-248ENST00000636355 SLC4A3P48751 1232 aa12.56□□□□□ -0.4
CLN3-248ENST00000636355 ADCK5Q3MIX3 580 aa12.56□□□□□ -0.4
CLN3-248ENST00000636355 DZIP1Q86YF9 867 aaKnown RBP12.56□□□□□ -0.4
CLN3-248ENST00000636355 POLLQ9UGP5 575 aa12.56□□□□□ -0.4
CLN3-248ENST00000636355 FER1L6Q2WGJ9 1857 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 PATL2C9JE40 543 aaKnown RBP12.55□□□□□ -0.4
CLN3-248ENST00000636355 FGAP02671 866 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 LDHBP07195 334 aaKnown RBP12.55□□□□□ -0.4
CLN3-248ENST00000636355 LDHCP07864 332 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 POLD1P28340 1107 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 AK2P54819 239 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 FKBP1AP62942 108 aaKnown RBP12.55□□□□□ -0.4
CLN3-248ENST00000636355 MECOMQ03112 1051 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 ZNF622Q969S3 477 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLN3-248ENST00000636355 RIOK1Q9BRS2 568 aaKnown RBP12.55□□□□□ -0.4
CLN3-248ENST00000636355 MTA3Q9BTC8 594 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 AGXT2Q9BYV1 514 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 NAPBQ9H115 298 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 CNNM2Q9H8M5 875 aa12.55□□□□□ -0.4
CLN3-248ENST00000636355 IQSEC3Q9UPP2 1182 aaPredicted RBP12.55□□□□□ -0.4
CLN3-248ENST00000636355 WTIPA6NIX2 430 aaPredicted RBP12.54□□□□□ -0.4
CLN3-248ENST00000636355 E7EWF7 191 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 C6orf229H3BNL8 230 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 ZNF213O14771 459 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 PLCG2P16885 1265 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 TGFB2P61812 414 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 SLFNL1Q499Z3 407 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 DHX32Q7L7V1 743 aaKnown RBP12.54□□□□□ -0.4
CLN3-248ENST00000636355 C7orf43Q8WVR3 580 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 CRNKL1Q9BZJ0 848 aaKnown RBP12.54□□□□□ -0.4
CLN3-248ENST00000636355 ZC3H12CQ9C0D7 883 aaKnown RBP12.54□□□□□ -0.4
CLN3-248ENST00000636355 VPS33BQ9H267 617 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 RNF41Q9H4P4 317 aaPredicted RBP12.54□□□□□ -0.4
CLN3-248ENST00000636355 SCN9AQ15858 1988 aa12.54□□□□□ -0.4
CLN3-248ENST00000636355 GSG1L2A8MUP6 293 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 PRDX5P30044 214 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 NUCB2P80303 420 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 TRDNQ13061 729 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 CHAF1AQ13111 956 aaPredicted RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 CCDC93Q567U6 631 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 PODNQ7Z5L7 613 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 RALYLQ86SE5 291 aaKnown RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 RTKN2Q8IZC4 609 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 IFNL3Q8IZI9 196 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 LCORLQ8N3X6 602 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 NCOA7Q8NI08 942 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 FAM163AQ96GL9 167 aaPredicted RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 PSMD1Q99460 953 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 NOL10Q9BSC4 688 aaKnown RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 SLKQ9H2G2 1235 aaPredicted RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 ARMT1Q9H993 441 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms