RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 NAPGQ99747 312 aaPredicted RBP17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 PPANQ9NQ55 473 aaKnown RBP17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 HMG20BQ9P0W2 317 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 MUM1Q2TAK8 710 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 LCA5Q86VQ0 697 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 CXorf38Q8TB03 319 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 GOLGA6BA6NDN3 693 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 PDE4BQ07343 736 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 KIAA1524Q8TCG1 905 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 FRMD4BQ9Y2L6 1034 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 OPHN1O60890 802 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 GIGYF1O75420 1035 aaPredicted RBP17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 PPP1R42Q7Z4L9 355 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 ATP5DP30049 168 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 PPP2R5DQ14738 602 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 ZSCAN26Q16670 478 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 AP1ARQ63HQ0 302 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 NUDT16Q96DE0 195 aaKnown RBP17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 XAB2Q9HCS7 855 aaKnown RBP17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 RIPOR2Q9Y4F9 1068 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 ATP5J2-PTCD1G3V325 749 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 ARHGAP25P42331 645 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 RTN1Q16799 776 aa17.15■□□□□ 0.34
PDLIM2-220ENST00000622226 LMTK3Q96Q04 1460 aa17.14■□□□□ 0.34
PDLIM2-220ENST00000622226 ZNF692Q9BU19 519 aaPredicted RBP17.14■□□□□ 0.34
PDLIM2-220ENST00000622226 MRC2Q9UBG0 1479 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 SESN3P58005 492 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 GABPB1Q06547 395 aaPredicted RBP17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 SH2D4BQ5SQS7 431 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 ERMNQ8TAM6 284 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 IFIT1BQ5T764 474 aaKnown RBP17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 CALM1P0DP23 149 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 CALM2P0DP24 149 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 CALM3P0DP25 149 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 POLD1P28340 1107 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 JAKMIP2Q96AA8 810 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 VPS16Q9H269 839 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 MAP3K2Q9Y2U5 619 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 ANKRD24Q8TF21 1146 aa17.14■□□□□ 0.33
PDLIM2-220ENST00000622226 MAK16Q9BXY0 300 aaKnown RBP17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 PHLDB2Q86SQ0 1253 aa17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 KLHL7Q8IXQ5 586 aa17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 MYCBPQ99417 103 aaPredicted RBP17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 ZBTB3Q9H5J0 574 aa17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 A0A1B0GVL5 298 aa17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 ZNF365Q70YC5 407 aa17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 TSGA10Q9BZW7 698 aa17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 IMPG2Q9BZV3 1241 aa17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 UTP11Q9Y3A2 253 aaKnown RBP17.13■□□□□ 0.33
PDLIM2-220ENST00000622226 RAB3GAP1Q15042 981 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 RUFY3Q7L099 469 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 RBM28Q9NW13 759 aaKnown RBP17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 CTNND2Q9UQB3 1225 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 GPR161Q8N6U8 529 aaKnown RBP17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 MYRIPQ8NFW9 859 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 AGTPBP1Q9UPW5 1226 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 POLA1P09884 1462 aaPredicted RBP17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 BICDL2A1A5D9 508 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 TUBBP07437 444 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 MIER3Q7Z3K6 550 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 SPOPO43791 374 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 LIG3P49916 1009 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 CCDC14Q49A88 953 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 USP37Q86T82 979 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 HHATQ5VTY9 493 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 CLSTN2Q9H4D0 955 aa17.12■□□□□ 0.33
PDLIM2-220ENST00000622226 BAG2O95816 211 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 RPSAP08865 295 aaKnown RBP17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 RXRAP19793 462 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 KRT9P35527 623 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 CNGA4Q8IV77 575 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 TBC1D31Q96DN5 1066 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 SPECC1L-ADORA2AF8WAN1 911 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 PFDN1O60925 122 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 MX2P20592 715 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 LDHAL6AQ6ZMR3 332 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 IGSF22Q8N9C0 903 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 ESYT1Q9BSJ8 1104 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 NUCB1Q02818 461 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 ANKRD42Q8N9B4 389 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 MAPK8IP1Q9UQF2 711 aa17.11■□□□□ 0.33
PDLIM2-220ENST00000622226 TRIM75PA6NK02 468 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 ATP6V1AP38606 617 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 NBPF14Q5TI25 921 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 SND1Q7KZF4 910 aaKnown RBP eCLIP17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 WDR97A6NE52 1622 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 NAPAP54920 295 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 ZBTB21Q9ULJ3 1066 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 TSPY3P0CV98 308 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 TSPY8P0CW00 308 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 KRT5P13647 590 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 APOBRQ0VD83 1088 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 IQSEC3Q9UPP2 1182 aaPredicted RBP17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 MGEA5O60502 916 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 PROCA1Q8NCQ7 364 aaPredicted RBP17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 RILPQ96NA2 401 aa17.1■□□□□ 0.33
PDLIM2-220ENST00000622226 AK2P54819 239 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 IFT20Q8IY31 132 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms