RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 PDIA3P30101 505 aaKnown RBP12.39□□□□□ -0.43
CDH1-214ENST00000621016 BMS1Q14692 1282 aaKnown RBP12.39□□□□□ -0.43
CDH1-214ENST00000621016 PACS2Q86VP3 889 aa12.39□□□□□ -0.43
CDH1-214ENST00000621016 AOPEPQ8N6M6 819 aa12.39□□□□□ -0.43
CDH1-214ENST00000621016 XAGE2Q96GT9 111 aa12.39□□□□□ -0.43
CDH1-214ENST00000621016 PUS7LQ9H0K6 701 aaKnown RBP12.39□□□□□ -0.43
CDH1-214ENST00000621016 CNNM1Q9NRU3 951 aa12.39□□□□□ -0.43
CDH1-214ENST00000621016 NFAT5O94916 1531 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 RNF113AO15541 343 aaKnown RBP12.38□□□□□ -0.43
CDH1-214ENST00000621016 ZNF75DP51815 510 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 ZSCAN26Q16670 478 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 RRP12Q5JTH9 1297 aaKnown RBP12.38□□□□□ -0.43
CDH1-214ENST00000621016 METTL24Q5JXM2 366 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 LRP10Q7Z4F1 713 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 SLC24A3Q9HC58 644 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 HEG1Q9ULI3 1381 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 SMC2O95347 1197 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 FGAP02671 866 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 IL15P40933 162 aaPredicted RBP12.38□□□□□ -0.43
CDH1-214ENST00000621016 TTC19Q6DKK2 380 aaPredicted RBP12.38□□□□□ -0.43
CDH1-214ENST00000621016 LDHAL6AQ6ZMR3 332 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 MICU3Q86XE3 530 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 ORC3Q9UBD5 711 aaPredicted RBP12.38□□□□□ -0.43
CDH1-214ENST00000621016 ASAP1Q9ULH1 1129 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 CLIC4Q9Y696 253 aa12.38□□□□□ -0.43
CDH1-214ENST00000621016 MAP2K1Q02750 393 aaPredicted RBP12.37□□□□□ -0.43
CDH1-214ENST00000621016 TTC31Q49AM3 519 aaPredicted RBP12.37□□□□□ -0.43
CDH1-214ENST00000621016 C8orf76Q96K31 380 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 IQSEC3Q9UPP2 1182 aaPredicted RBP12.37□□□□□ -0.43
CDH1-214ENST00000621016 PRC1O43663 620 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 ZSCAN25Q6NSZ9 544 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 DNAJC10Q8IXB1 793 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 PHKBQ93100 1093 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 SMARCE1Q969G3 411 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.37□□□□□ -0.43
CDH1-214ENST00000621016 TBC1D2BQ9UPU7 963 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 TMEM94Q12767 1356 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 UBE2Q2LH0YL09 131 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 ADD1P35611 737 aaKnown RBP12.37□□□□□ -0.43
CDH1-214ENST00000621016 USPL1Q5W0Q7 1092 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 SYNE3Q6ZMZ3 975 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 NFXL1Q6ZNB6 911 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 GOLGA6L1Q8N7Z2 621 aa12.37□□□□□ -0.43
CDH1-214ENST00000621016 USP27XA6NNY8 438 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 PFKFB2O60825 505 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 IFIT5Q13325 482 aaKnown RBP12.36□□□□□ -0.43
CDH1-214ENST00000621016 IMMTQ16891 758 aaKnown RBP12.36□□□□□ -0.43
CDH1-214ENST00000621016 RABL6Q3YEC7 729 aaPredicted RBP12.36□□□□□ -0.43
CDH1-214ENST00000621016 SPECC1Q5M775 1068 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 SLC9C2Q5TAH2 1124 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 GOLGB1Q14789 3259 aaKnown RBP12.36□□□□□ -0.43
CDH1-214ENST00000621016 H7C1W4 665 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 LRCH2Q5VUJ6 765 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 CMTR1Q8N1G2 835 aaKnown RBP12.36□□□□□ -0.43
CDH1-214ENST00000621016 ZSCAN16Q9H4T2 348 aaPredicted RBP12.36□□□□□ -0.43
CDH1-214ENST00000621016 PCDHA7Q9UN72 937 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 RRP15Q9Y3B9 282 aaKnown RBP12.36□□□□□ -0.43
CDH1-214ENST00000621016 ZNF213O14771 459 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 NDUFA8P51970 172 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 ZMYM1Q5SVZ6 1142 aa12.36□□□□□ -0.43
CDH1-214ENST00000621016 ELP1O95163 1332 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 LRRC37A3O60309 1634 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 LMAN1P49257 510 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 CASP7P55210 303 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 ZNF396Q96N95 335 aaPredicted RBP12.35□□□□□ -0.43
CDH1-214ENST00000621016 ZKSCAN3Q9BRR0 538 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 SPTLC3Q9NUV7 552 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 SKILP12757 684 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 RPAINQ86UA6 219 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 TICAM2Q86XR7 235 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 ZNF397Q8NF99 534 aaPredicted RBP12.35□□□□□ -0.43
CDH1-214ENST00000621016 SRRTQ9BXP5 876 aaKnown RBP12.35□□□□□ -0.43
CDH1-214ENST00000621016 PLEKHA4Q9H4M7 779 aa12.35□□□□□ -0.43
CDH1-214ENST00000621016 HMGB1P09429 215 aaKnown RBP12.34□□□□□ -0.43
CDH1-214ENST00000621016 LMOD1P29536 600 aaPredicted RBP12.34□□□□□ -0.43
CDH1-214ENST00000621016 TRDNQ13061 729 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 NKX2-3Q8TAU0 364 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 SENP2Q9HC62 589 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 TMOD3Q9NYL9 352 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 CACNA1FO60840 1977 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 GPAA1O43292 621 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 FDPSP14324 419 aaKnown RBP12.34□□□□□ -0.43
CDH1-214ENST00000621016 DHX8Q14562 1220 aaKnown RBP12.34□□□□□ -0.43
CDH1-214ENST00000621016 HLFQ16534 295 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 FAM177A1Q8N128 213 aaPredicted RBP12.34□□□□□ -0.43
CDH1-214ENST00000621016 B4E1Z4 1266 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 TSGA10IPQ3SY00 556 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 CCDC34Q96HJ3 373 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 GREM2Q9H772 168 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 HELLSQ9NRZ9 838 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 DONSONQ9NYP3 566 aa12.34□□□□□ -0.43
CDH1-214ENST00000621016 SCP2P22307 547 aa12.33□□□□□ -0.44
CDH1-214ENST00000621016 DPCR1Q3MIW9 517 aa12.33□□□□□ -0.44
CDH1-214ENST00000621016 TRMT112Q9UI30 125 aaKnown RBP12.33□□□□□ -0.44
CDH1-214ENST00000621016 NCAPD2Q15021 1401 aa12.33□□□□□ -0.44
CDH1-214ENST00000621016 C1orf167Q5SNV9 1468 aa12.33□□□□□ -0.44
CDH1-214ENST00000621016 FER1L4A9Z1Z3 1794 aa12.33□□□□□ -0.44
CDH1-214ENST00000621016 MAP2K2P36507 400 aa12.33□□□□□ -0.44
CDH1-214ENST00000621016 STX1AQ16623 288 aa12.33□□□□□ -0.44
CDH1-214ENST00000621016 KIF6Q6ZMV9 814 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms