RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TCP10Q12799 353 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 LGR6Q9HBX8 967 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 RTL1A6NKG5 1358 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 NOP56O00567 594 aaKnown RBP12.89□□□□□ -0.35
CLIP1-219ENST00000620786 GIMAP6Q6P9H5 292 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 ZFYVE16Q7Z3T8 1539 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 GOLGA6L9A6NEM1 432 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 HARSP12081 509 aaKnown RBP12.89□□□□□ -0.35
CLIP1-219ENST00000620786 TNNI3KQ59H18 835 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 DNAJC10Q8IXB1 793 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 FPGT-TNNI3KV9GXZ4 949 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 SPTLC2O15270 562 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 CYLC1P35663 651 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-219ENST00000620786 TIMM10P62072 90 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 ARID5AQ03989 594 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 ZSCAN30Q86W11 494 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 CCDC117Q8IWD4 279 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-219ENST00000620786 MSANTD4Q8NCY6 345 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 FERP16591 822 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 SPAG1Q07617 926 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 LETM2Q2VYF4 491 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 DHX32Q7L7V1 743 aaKnown RBP12.88□□□□□ -0.35
CLIP1-219ENST00000620786 TBC1D32Q96NH3 1257 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 RAD50Q92878 1312 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 BICDL2A1A5D9 508 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 ESPNB1AK53 854 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 CARD14Q9BXL6 1004 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 KAT6BQ8WYB5 2073 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 H7C1D1 291 aa12.88□□□□□ -0.35
CLIP1-219ENST00000620786 CALRP27797 417 aaKnown RBP12.87□□□□□ -0.35
CLIP1-219ENST00000620786 DLGAP5Q15398 846 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 MAATS1Q7Z4T9 603 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 TCOF1Q13428 1488 aaKnown RBP12.87□□□□□ -0.35
CLIP1-219ENST00000620786 RUFY3Q7L099 469 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 CEP83Q9Y592 693 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 PBRM1Q86U86 1689 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 B4E1Z4 1266 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 ARL1P40616 181 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-219ENST00000620786 G2E3Q7L622 706 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 CERS3Q8IU89 383 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 C16orf45Q96MC5 204 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-219ENST00000620786 POTEB2H3BUK9 544 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 SNW1Q13573 536 aaKnown RBP12.87□□□□□ -0.35
CLIP1-219ENST00000620786 F13A1P00488 732 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 ANO6Q4KMQ2 910 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 CCDC129Q6ZRS4 1044 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 CCDC50Q8IVM0 306 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 PPP1R14CQ8TAE6 165 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 BABAM1Q9NWV8 329 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 TNNQ9UQP3 1299 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 PIK3C2GO75747 1445 aa12.87□□□□□ -0.35
CLIP1-219ENST00000620786 CAVIN2O95810 425 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 ARHGAP27Q6ZUM4 889 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 PARD3Q8TEW0 1356 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 IL13P35225 146 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 CCT6AP40227 531 aaKnown RBP12.86□□□□□ -0.35
CLIP1-219ENST00000620786 PRPHP41219 470 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 PDCL2Q8N4E4 241 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 DCTPP1Q9H773 170 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 MROH5Q6ZUA9 1318 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 AK2P54819 239 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 IRX3P78415 501 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-219ENST00000620786 GSTA5Q7RTV2 222 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 CCDC169A6NNP5 214 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 ZNF174Q15697 407 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 USP48Q86UV5 1035 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 FLAD1Q8NFF5 587 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 LPIN2Q92539 896 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 DDX12PQ92771 950 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
CLIP1-219ENST00000620786 SELENOOQ9BVL4 669 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 CCNT1O60563 726 aaKnown RBP12.85□□□□□ -0.35
CLIP1-219ENST00000620786 PTGS1P23219 599 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 SV2BQ7L1I2 683 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 CCDC65Q8IXS2 484 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 NEK11Q8NG66 645 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 DDX39AO00148 427 aaKnown RBP12.85□□□□□ -0.35
CLIP1-219ENST00000620786 DNM1Q05193 864 aaKnown RBP12.85□□□□□ -0.35
CLIP1-219ENST00000620786 DCAF17Q5H9S7 520 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-219ENST00000620786 DPY19L2Q6NUT2 758 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 C2CD5Q86YS7 1000 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 AOPEPQ8N6M6 819 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 FNBP1Q96RU3 617 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 RASAL2Q9UJF2 1139 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 SMCR8Q8TEV9 937 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-219ENST00000620786 SREK1Q8WXA9 508 aaKnown RBP12.85□□□□□ -0.35
CLIP1-219ENST00000620786 QTRT2Q9H974 415 aaKnown RBP12.85□□□□□ -0.35
CLIP1-219ENST00000620786 FRMD4BQ9Y2L6 1034 aa12.85□□□□□ -0.35
CLIP1-219ENST00000620786 SMTNP53814 917 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 USH1GQ495M9 461 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 MAPKAPK5Q8IW41 473 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 CPXCR1Q8N123 301 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 SPATA5Q8NB90 893 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 BBXQ8WY36 941 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-219ENST00000620786 IFT74Q96LB3 600 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 PODXL2Q9NZ53 605 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 GINS2Q9Y248 185 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 GNG11P61952 73 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 STRN3Q13033 797 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 BIRC3Q13489 604 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms