RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 UNC13AQ9UPW8 1703 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 ZMYM3Q14202 1370 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 RTL9Q8NET4 1388 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 TNNI2P48788 182 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 ADAMTS12P58397 1594 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 IFI16Q16666 785 aaKnown RBP15.89■□□□□ 0.13
CPSF1-212ENST00000616140 RILPL1Q5EBL4 403 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 KRT79Q5XKE5 535 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 DTHD1Q6ZMT9 781 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 EDC3Q96F86 508 aaKnown RBP15.89■□□□□ 0.13
CPSF1-212ENST00000616140 LLPHQ9BRT6 129 aaKnown RBP15.89■□□□□ 0.13
CPSF1-212ENST00000616140 CLSTN2Q9H4D0 955 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 ABCC4O15439 1325 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 APPBP2Q92624 585 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 GPAA1O43292 621 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 HSF2BPO75031 334 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 ZNF622Q969S3 477 aaKnown RBP eCLIP15.88■□□□□ 0.138e-8■■□□□ 13.1
CPSF1-212ENST00000616140 BAG1Q99933 345 aaPredicted RBP15.88■□□□□ 0.13
CPSF1-212ENST00000616140 CCDC94Q9BW85 323 aaPredicted RBP15.88■□□□□ 0.13
CPSF1-212ENST00000616140 PKP1Q13835 747 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 CAPZA3Q96KX2 299 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 DISP1Q96F81 1524 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 A1BGP04217 495 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 RHOXF2BP0C7M4 288 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 UBE4AQ14139 1066 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 GCKRQ14397 625 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 RHOXF2Q9BQY4 288 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 KCNH3Q9ULD8 1083 aa15.88■□□□□ 0.13
CPSF1-212ENST00000616140 NEBLO76041 1014 aa15.87■□□□□ 0.13
CPSF1-212ENST00000616140 PALD1Q9ULE6 856 aa15.87■□□□□ 0.13
CPSF1-212ENST00000616140 ZNF174Q15697 407 aa15.87■□□□□ 0.13
CPSF1-212ENST00000616140 CCT6AP40227 531 aaKnown RBP15.87■□□□□ 0.13
CPSF1-212ENST00000616140 CCDC174Q6PII3 467 aa15.87■□□□□ 0.13
CPSF1-212ENST00000616140 CCDC91Q7Z6B0 441 aa15.87■□□□□ 0.13
CPSF1-212ENST00000616140 DIS3L2Q8IYB7 885 aaKnown RBP15.87■□□□□ 0.13
CPSF1-212ENST00000616140 ZNF496Q96IT1 587 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-212ENST00000616140 ORAI2Q96SN7 254 aa15.87■□□□□ 0.13
CPSF1-212ENST00000616140 CAPN2P17655 700 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 GIMAP7Q8NHV1 300 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 XAGE2Q96GT9 111 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 RSPH14Q9UHP6 348 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 ITGA6P23229 1130 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 TPTE2Q6XPS3 522 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 CNGA4Q8IV77 575 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 TMEM87BQ96K49 555 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 CALRP27797 417 aaKnown RBP15.86■□□□□ 0.13
CPSF1-212ENST00000616140 RIOK3O14730 519 aaKnown RBP15.86■□□□□ 0.13
CPSF1-212ENST00000616140 PRDM1O75626 825 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 CCDC172P0C7W6 258 aa15.86■□□□□ 0.13
CPSF1-212ENST00000616140 U2AF2P26368 475 aaKnown RBP eCLIP15.86■□□□□ 0.138e-10■■■■□ 20.5
CPSF1-212ENST00000616140 EIF4A1P60842 406 aaKnown RBP15.86■□□□□ 0.13
CPSF1-212ENST00000616140 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-212ENST00000616140 ZNF75DP51815 510 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 SSH3Q8TE77 659 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 TM6SF1Q9BZW5 370 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 INCENPQ9NQS7 918 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 GNA11P29992 359 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 EVCP57679 992 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 AKR1B15C9JRZ8 316 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-212ENST00000616140 ME3Q16798 604 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 ATRIPQ8WXE1 791 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 CHAMP1Q96JM3 812 aa15.85■□□□□ 0.13
CPSF1-212ENST00000616140 BICDL2A1A5D9 508 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 MYL10Q9BUA6 226 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 KIAA0232Q92628 1395 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 FSD2A1L4K1 749 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 POLR2DO15514 142 aaKnown RBP15.84■□□□□ 0.13
CPSF1-212ENST00000616140 ZNF202O95125 648 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 ST5P78524 1137 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 FANCCQ00597 558 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 MAPK8IP1Q9UQF2 711 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 SH3TC1Q8TE82 1336 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 ATP2C2O75185 946 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 IGSF22Q8N9C0 903 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 TBC1D5Q92609 795 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 PHKBQ93100 1093 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 RRP36Q96EU6 259 aaKnown RBP15.84■□□□□ 0.13
CPSF1-212ENST00000616140 ERO1AQ96HE7 468 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 VPS16Q9H269 839 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 ARMT1Q9H993 441 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 DEXIO95424 95 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 TRMT2AQ8IZ69 625 aaKnown RBP15.84■□□□□ 0.13
CPSF1-212ENST00000616140 GTF3C6Q969F1 213 aa15.84■□□□□ 0.13
CPSF1-212ENST00000616140 V9GY48 417 aaPredicted RBP15.84■□□□□ 0.13
CPSF1-212ENST00000616140 SELENOOQ9BVL4 669 aa15.83■□□□□ 0.13
CPSF1-212ENST00000616140 PLVAPQ9BX97 442 aa15.83■□□□□ 0.13
CPSF1-212ENST00000616140 ZC3H12CQ9C0D7 883 aaKnown RBP15.83■□□□□ 0.13
CPSF1-212ENST00000616140 PCDH11XQ9BZA7 1347 aa15.83■□□□□ 0.12
CPSF1-212ENST00000616140 PCDH11YQ9BZA8 1340 aa15.83■□□□□ 0.12
CPSF1-212ENST00000616140 CCDC122Q5T0U0 273 aa15.83■□□□□ 0.12
CPSF1-212ENST00000616140 IL17REQ8NFR9 667 aa15.83■□□□□ 0.12
CPSF1-212ENST00000616140 NEK11Q8NG66 645 aa15.83■□□□□ 0.12
CPSF1-212ENST00000616140 EAF2Q96CJ1 260 aaPredicted RBP15.83■□□□□ 0.12
CPSF1-212ENST00000616140 PPP2R3AQ06190 1150 aa15.83■□□□□ 0.12
CPSF1-212ENST00000616140 LETM2Q2VYF4 491 aa15.83■□□□□ 0.12
CPSF1-212ENST00000616140 LDHBP07195 334 aaKnown RBP15.82■□□□□ 0.12
CPSF1-212ENST00000616140 SPECC1LQ69YQ0 1117 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 ZNF804AQ7Z570 1209 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 NFE2L3Q9Y4A8 694 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 KRT13P13646 458 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms