RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 PEAK1Q9H792 1746 aa12.55□□□□□ -0.4
FAM3A-221ENST00000612856 PTGS1P23219 599 aa12.55□□□□□ -0.4
FAM3A-221ENST00000612856 CHRNDQ07001 517 aa12.55□□□□□ -0.4
FAM3A-221ENST00000612856 TTF1Q15361 905 aaPredicted RBP12.55□□□□□ -0.4
FAM3A-221ENST00000612856 PUM3Q15397 648 aaKnown RBP12.55□□□□□ -0.4
FAM3A-221ENST00000612856 EZH2Q15910 746 aaKnown RBP12.55□□□□□ -0.4
FAM3A-221ENST00000612856 USP48Q86UV5 1035 aa12.55□□□□□ -0.4
FAM3A-221ENST00000612856 ZBTB38Q8NAP3 1195 aaPredicted RBP12.55□□□□□ -0.4
FAM3A-221ENST00000612856 NEK1Q96PY6 1258 aa12.55□□□□□ -0.4
FAM3A-221ENST00000612856 HDAC9Q9UKV0 1011 aa12.55□□□□□ -0.4
FAM3A-221ENST00000612856 PALD1Q9ULE6 856 aa12.55□□□□□ -0.4
FAM3A-221ENST00000612856 GOLGA6L19H0YKK7 550 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 TBC1D9BQ66K14 1250 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 TTLL5Q6EMB2 1281 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 CCDC186Q7Z3E2 898 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 ESYT1Q9BSJ8 1104 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 SLC26A6Q9BXS9 759 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 KRT18P05783 430 aaKnown RBP12.54□□□□□ -0.4
FAM3A-221ENST00000612856 HOXB7P09629 217 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 SP4Q02446 784 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 MCMDC2Q4G0Z9 681 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 CKAP2LQ8IYA6 745 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 PDILTQ8N807 584 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 PDE4DIPQ5VU43 2346 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 TEX35Q5T0J7 233 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 SPTY2D1Q68D10 685 aaPredicted RBP12.54□□□□□ -0.4
FAM3A-221ENST00000612856 KRT222Q8N1A0 295 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 DLG5Q8TDM6 1919 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 HMGB2P26583 209 aaKnown RBP12.54□□□□□ -0.4
FAM3A-221ENST00000612856 CACNB3P54284 484 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 TGFBRAP1Q8WUH2 860 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 GTF3C6Q969F1 213 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 TMX3Q96JJ7 454 aa12.54□□□□□ -0.4
FAM3A-221ENST00000612856 B4E1Z4 1266 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 CHMLP26374 656 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 PDLIM2Q96JY6 352 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 EYA3Q99504 573 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 HEG1Q9ULI3 1381 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 A0A0G2JLW4 131 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 PDE4BQ07343 736 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 GPATCH11Q8N954 259 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 CDK5RAP3Q96JB5 506 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 PYCARDQ9ULZ3 195 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 ATP10DQ9P241 1426 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 TCP10L2B9ZVM9 353 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 NRDCO43847 1150 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 MYCP01106 439 aaPredicted RBP12.53□□□□□ -0.4
FAM3A-221ENST00000612856 IGKV5-2P06315 115 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 MKRN3Q13064 507 aaKnown RBP12.53□□□□□ -0.4
FAM3A-221ENST00000612856 SLF2Q8IX21 1173 aa12.53□□□□□ -0.4
FAM3A-221ENST00000612856 LIG1P18858 919 aa12.52□□□□□ -0.4
FAM3A-221ENST00000612856 KRT32Q14532 448 aa12.52□□□□□ -0.4
FAM3A-221ENST00000612856 CNPY2Q9Y2B0 182 aa12.52□□□□□ -0.4
FAM3A-221ENST00000612856 MON2Q7Z3U7 1717 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 LMOD1P29536 600 aaPredicted RBP12.52□□□□□ -0.41
FAM3A-221ENST00000612856 ANKRD2Q9GZV1 360 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 KAT14Q9H8E8 782 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 CTDSPL2Q05D32 466 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 DIXDC1Q155Q3 683 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 ISM2Q6H9L7 571 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 NIM1KQ8IY84 436 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 CELF1Q92879 486 aaKnown RBP12.52□□□□□ -0.41
FAM3A-221ENST00000612856 ORC3Q9UBD5 711 aaPredicted RBP12.52□□□□□ -0.41
FAM3A-221ENST00000612856 SEC63Q9UGP8 760 aaKnown RBP12.52□□□□□ -0.41
FAM3A-221ENST00000612856 RGS12O14924 1447 aa12.52□□□□□ -0.41
FAM3A-221ENST00000612856 PXDNQ92626 1479 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 APOBRQ0VD83 1088 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 ITPK1Q13572 414 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 CCDC183Q5T5S1 534 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 CCDC102BQ68D86 513 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 RNF113AO15541 343 aaKnown RBP12.51□□□□□ -0.41
FAM3A-221ENST00000612856 GPAA1O43292 621 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 IRX5P78411 483 aaPredicted RBP12.51□□□□□ -0.41
FAM3A-221ENST00000612856 CATIPQ7Z7H3 387 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 C10orf67Q8IYJ2 551 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 SSH3Q8TE77 659 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 LPIN2Q92539 896 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 SOS2Q07890 1332 aaPredicted RBP12.51□□□□□ -0.41
FAM3A-221ENST00000612856 ZNF532Q9HCE3 1301 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 CCDC192P0DO97 292 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 PDCP20941 246 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 FAM47AQ5JRC9 791 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 CPXCR1Q8N123 301 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 FAM177A1Q8N128 213 aaPredicted RBP12.51□□□□□ -0.41
FAM3A-221ENST00000612856 CMTR1Q8N1G2 835 aaKnown RBP12.51□□□□□ -0.41
FAM3A-221ENST00000612856 C8orf76Q96K31 380 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 KIF2CQ99661 725 aa12.51□□□□□ -0.41
FAM3A-221ENST00000612856 NCOA5Q9HCD5 579 aaKnown RBP12.51□□□□□ -0.41
FAM3A-221ENST00000612856 SPATA31A1Q5TZJ5 1347 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 NLRP5P59047 1200 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 WTAPQ15007 396 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 ZNF287Q9HBT7 754 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 NRKQ7Z2Y5 1582 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 CYP19A1P11511 503 aaPredicted RBP12.5□□□□□ -0.41
FAM3A-221ENST00000612856 LRMPQ12912 555 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 Q6ZUG5 572 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 NCOA7Q8NI08 942 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 PCCAP05165 728 aaPredicted RBP12.5□□□□□ -0.41
FAM3A-221ENST00000612856 ANKRD1Q15327 319 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 SPATA5Q8NB90 893 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms