RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ADM5C9JUS6 153 aa17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 UQCRFS1P1P0C7P4 283 aa17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 ZAP70P43403 619 aa17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 CRKP46108 304 aa17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 AAMPQ13685 434 aa17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 DLGAP5Q15398 846 aa17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 CCDC158Q5M9N0 1113 aa17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 ZNF512BQ96KM6 892 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-217ENST00000598558 SPDYE2BA6NHP3 402 aa17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 CYP2E1P05181 493 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 SPDYE6P0CI01 402 aa17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 HSPA6P17066 643 aa17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 MMP14P50281 582 aa17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 DIXDC1Q155Q3 683 aa17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 SERPINA10Q9UK55 444 aa17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 SUGT1Q9Y2Z0 365 aa17.43■□□□□ 0.38
SHKBP1-217ENST00000598558 CLRN2A0PK11 232 aa17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 IFIT2P09913 472 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 RBM5P52756 815 aaKnown RBP eCLIP17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 CST9Q5W186 159 aa17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 APOBEC3HQ6NTF7 200 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 OTUD7AQ8TE49 926 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 MRIQ9BWK5 157 aa17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 PIH1D3Q9NQM4 214 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 ABCF2Q9UG63 623 aa17.42■□□□□ 0.38
SHKBP1-217ENST00000598558 LDHBP07195 334 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 HDLBPQ00341 1268 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 PRAMEF18Q5VWM3 479 aa17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 CDC37L1Q7L3B6 337 aa17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 KRT26Q7Z3Y9 468 aa17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 DCPSQ96C86 337 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 ANTXR1Q9H6X2 564 aa17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 TDRD3Q9H7E2 651 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-217ENST00000598558 APLP1P51693 650 aa17.4■□□□□ 0.38
SHKBP1-217ENST00000598558 ZDHHC15Q96MV8 337 aa17.4■□□□□ 0.38
SHKBP1-217ENST00000598558 ZNF70Q9UC06 446 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-217ENST00000598558 DAGLAQ9Y4D2 1042 aa17.4■□□□□ 0.38
SHKBP1-217ENST00000598558 MECOMQ03112 1051 aa17.39■□□□□ 0.37
SHKBP1-217ENST00000598558 ANKRD45Q5TZF3 282 aa17.39■□□□□ 0.37
SHKBP1-217ENST00000598558 TSHZ3Q63HK5 1081 aa17.39■□□□□ 0.37
SHKBP1-217ENST00000598558 HHIPL2Q6UWX4 724 aa17.39■□□□□ 0.37
SHKBP1-217ENST00000598558 SMC5Q8IY18 1101 aa17.39■□□□□ 0.37
SHKBP1-217ENST00000598558 TEKT1Q969V4 418 aa17.39■□□□□ 0.37
SHKBP1-217ENST00000598558 EDC3Q96F86 508 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-217ENST00000598558 CACNB3P54284 484 aa17.38■□□□□ 0.37
SHKBP1-217ENST00000598558 SPDYE2Q495Y8 402 aa17.38■□□□□ 0.37
SHKBP1-217ENST00000598558 NSUN4Q96CB9 384 aaKnown RBP17.38■□□□□ 0.37
SHKBP1-217ENST00000598558 RWDD1Q9H446 243 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-217ENST00000598558 PITPNM2Q9BZ72 1349 aa17.38■□□□□ 0.37
SHKBP1-217ENST00000598558 ATP5JP18859 108 aa17.37■□□□□ 0.37
SHKBP1-217ENST00000598558 ERICH6Q7L0X2 663 aa17.37■□□□□ 0.37
SHKBP1-217ENST00000598558 SULF1Q8IWU6 871 aa17.37■□□□□ 0.37
SHKBP1-217ENST00000598558 ZGPATQ8N5A5 531 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-217ENST00000598558 GCC1Q96CN9 775 aa17.37■□□□□ 0.37
SHKBP1-217ENST00000598558 BOLA2Q9H3K6 86 aa17.37■□□□□ 0.37
SHKBP1-217ENST00000598558 SPTY2D1Q68D10 685 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 B4GALNT3Q6L9W6 998 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 CDAN1Q8IWY9 1227 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 CDCA5Q96FF9 252 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 FAM163AQ96GL9 167 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 VEZTQ9HBM0 779 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 RAI14Q9P0K7 980 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 LRP2BPQ9P2M1 347 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 GAKO14976 1311 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 MAST3O60307 1309 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 SALL3Q9BXA9 1300 aa17.36■□□□□ 0.37
SHKBP1-217ENST00000598558 CELF2O95319 508 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-217ENST00000598558 CDC42EP5Q6NZY7 148 aa17.35■□□□□ 0.37
SHKBP1-217ENST00000598558 ADGRA1Q86SQ6 560 aa17.35■□□□□ 0.37
SHKBP1-217ENST00000598558 DZIP1Q86YF9 867 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-217ENST00000598558 DEFB129Q9H1M3 183 aa17.35■□□□□ 0.37
SHKBP1-217ENST00000598558 ZNF408Q9H9D4 720 aa17.35■□□□□ 0.37
SHKBP1-217ENST00000598558 AKAP11Q9UKA4 1901 aa17.35■□□□□ 0.37
SHKBP1-217ENST00000598558 TMEM88BA6NKF7 163 aa17.34■□□□□ 0.37
SHKBP1-217ENST00000598558 TCP10L2B9ZVM9 353 aa17.34■□□□□ 0.37
SHKBP1-217ENST00000598558 CHGBP05060 677 aa17.34■□□□□ 0.37
SHKBP1-217ENST00000598558 CNTNAP1P78357 1384 aa17.34■□□□□ 0.37
SHKBP1-217ENST00000598558 DNAJC5GQ8N7S2 189 aa17.34■□□□□ 0.37
SHKBP1-217ENST00000598558 DNAJC2Q99543 621 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-217ENST00000598558 ECHDC1Q9NTX5 307 aa17.34■□□□□ 0.37
SHKBP1-217ENST00000598558 MROH7-TTC4A0A0A0MT08 1334 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 GPR75-ASB3A0A0A6YYF3 556 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 GOLIM4O00461 696 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 NFIAQ12857 509 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 RASA3Q14644 834 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 SLFNL1Q499Z3 407 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 MOB2Q70IA6 237 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 APOBEC3FQ8IUX4 373 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 ZFPM1Q8IX07 1006 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 TEPSINQ96N21 525 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 HAUS7Q99871 368 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 LNPKQ9C0E8 428 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 CREBZFQ9NS37 354 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 USP40Q9NVE5 1235 aa17.33■□□□□ 0.36
SHKBP1-217ENST00000598558 MYO1BO43795 1136 aa17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 IDH1O75874 414 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 BTDP43251 543 aa17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 RHBDL3P58872 404 aa17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 NUCB1Q02818 461 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms