RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ANO1Q5XXA6 986 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 FBXO18Q8NFZ0 1043 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 FEZ1Q99689 392 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 UTP14AQ9BVJ6 771 aaKnown RBP17.65■□□□□ 0.42
UPF1-204ENST00000596842 KDM6AO15550 1401 aaPredicted RBP17.65■□□□□ 0.42
UPF1-204ENST00000596842 B4E1Z4 1266 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 UBASH3AP57075 661 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 ARMCX5Q6P1M9 558 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 CNNM1Q9NRU3 951 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 CDC25BP30305 580 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 GSDMDP57764 484 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 SLC9C2Q5TAH2 1124 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 NBPF11Q86T75 865 aa17.65■□□□□ 0.42
UPF1-204ENST00000596842 FANCCQ00597 558 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 CMTR1Q8N1G2 835 aaKnown RBP17.64■□□□□ 0.41
UPF1-204ENST00000596842 MNS1Q8NEH6 495 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 RTEL1Q9NZ71 1219 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 METAP2P50579 478 aaKnown RBP eCLIP17.64■□□□□ 0.414e-7■■■■□ 21.5
UPF1-204ENST00000596842 E4F1Q66K89 784 aaPredicted RBP17.64■□□□□ 0.41
UPF1-204ENST00000596842 ZKSCAN3Q9BRR0 538 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 TRIM29Q14134 588 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 ZNF397Q8NF99 534 aaPredicted RBP17.64■□□□□ 0.41
UPF1-204ENST00000596842 PPP1R13BQ96KQ4 1090 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 SENP2Q9HC62 589 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 TMEM51Q9NW97 253 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 NCAPD2Q15021 1401 aa17.64■□□□□ 0.41
UPF1-204ENST00000596842 WDHD1O75717 1129 aaPredicted RBP17.63■□□□□ 0.41
UPF1-204ENST00000596842 EPC1Q9H2F5 836 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 NFAT5O94916 1531 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 ARHGAP29Q52LW3 1261 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 LDHAL6AQ6ZMR3 332 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 GPATCH11Q8N954 259 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 DPF2Q92785 391 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 ZSWIM4Q9H7M6 989 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 ZNF827Q17R98 1081 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 SKIDA1Q1XH10 827 aa17.63■□□□□ 0.41
UPF1-204ENST00000596842 H7C1W4 665 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 IFIT5Q13325 482 aaKnown RBP17.62■□□□□ 0.41
UPF1-204ENST00000596842 LRP10Q7Z4F1 713 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 VPS37DQ86XT2 251 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 KRT222Q8N1A0 295 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 SNAP23O00161 211 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 POLR3GO15318 223 aaPredicted RBP17.62■□□□□ 0.41
UPF1-204ENST00000596842 RBM6P78332 1123 aaKnown RBP17.62■□□□□ 0.41
UPF1-204ENST00000596842 CNNM3Q8NE01 707 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 SLC26A6Q9BXS9 759 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 DDX41Q9UJV9 622 aaKnown RBP17.62■□□□□ 0.41
UPF1-204ENST00000596842 ARHGAP23Q9P227 1491 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 CASP7P55210 303 aa17.62■□□□□ 0.41
UPF1-204ENST00000596842 UTP14CQ5TAP6 766 aaKnown RBP17.61■□□□□ 0.41
UPF1-204ENST00000596842 CPLX2Q6PUV4 134 aaKnown RBP17.61■□□□□ 0.41
UPF1-204ENST00000596842 OLFM4Q6UX06 510 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 NYAP1Q6ZVC0 841 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 ERO1AQ96HE7 468 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 KDM3BQ7LBC6 1761 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 TMEM232C9JQI7 657 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 LRRFIP1Q32MZ4 808 aaKnown RBP17.61■□□□□ 0.41
UPF1-204ENST00000596842 TRMT44Q8IYL2 757 aaKnown RBP17.61■□□□□ 0.41
UPF1-204ENST00000596842 PRDM11Q9NQV5 511 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 MROH7-TTC4A0A0A0MT08 1334 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 TOP1P11387 765 aaKnown RBP17.61■□□□□ 0.41
UPF1-204ENST00000596842 NKX2-3Q8TAU0 364 aa17.61■□□□□ 0.41
UPF1-204ENST00000596842 SLIT1O75093 1534 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 PATL2C9JE40 543 aaKnown RBP17.6■□□□□ 0.41
UPF1-204ENST00000596842 FOXN1O15353 648 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 ANTXR2P58335 489 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 NLRP12P59046 1061 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 KIF23Q02241 960 aaPredicted RBP17.6■□□□□ 0.41
UPF1-204ENST00000596842 KRT40Q6A162 431 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 NUP133Q8WUM0 1156 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 UBXN4Q92575 508 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 KLHL10Q6JEL2 608 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 CPLX3Q8WVH0 158 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 FANCLQ9NW38 375 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 HPS5Q9UPZ3 1129 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 ADGRL3Q9HAR2 1447 aa17.6■□□□□ 0.41
UPF1-204ENST00000596842 MED1Q15648 1581 aaPredicted RBP17.59■□□□□ 0.41
UPF1-204ENST00000596842 MEGF6O75095 1541 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 JCADQ9P266 1359 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 TAF3Q5VWG9 929 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 ZNF526Q8TF50 670 aaPredicted RBP17.59■□□□□ 0.41
UPF1-204ENST00000596842 TIGD1Q96MW7 591 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 CCDC150Q8NCX0 1101 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 KCNJ14Q9UNX9 436 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 GOLGA8AA7E2F4 631 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 IARSP41252 1262 aaKnown RBP17.59■□□□□ 0.41
UPF1-204ENST00000596842 GRAMD1CQ8IYS0 662 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 APPBP2Q92624 585 aa17.59■□□□□ 0.41
UPF1-204ENST00000596842 CTDSPL2Q05D32 466 aa17.58■□□□□ 0.41
UPF1-204ENST00000596842 TMEM67Q5HYA8 995 aa17.58■□□□□ 0.41
UPF1-204ENST00000596842 SALL1Q9NSC2 1324 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 ATL3Q6DD88 541 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 CYB5R4Q7L1T6 521 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 AIDAQ96BJ3 306 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 CARD6Q9BX69 1037 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 IQSEC3Q9UPP2 1182 aaPredicted RBP17.58■□□□□ 0.4
UPF1-204ENST00000596842 YEATS4O95619 227 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 CDC27P30260 824 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 ADKP55263 362 aaKnown RBP17.58■□□□□ 0.4
UPF1-204ENST00000596842 POLR3EQ9NVU0 708 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms