RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 BCL11BQ9C0K0 894 aaPredicted RBP23.17■■□□□ 1.3
CLIP3-206ENST00000593074 NCOA5Q9HCD5 579 aaKnown RBP23.17■■□□□ 1.3
CLIP3-206ENST00000593074 RALYLQ86SE5 291 aaKnown RBP23.17■■□□□ 1.3
CLIP3-206ENST00000593074 BSDC1Q9NW68 430 aaPredicted RBP23.17■■□□□ 1.3
CLIP3-206ENST00000593074 MYH15Q9Y2K3 1946 aa23.16■■□□□ 1.3
CLIP3-206ENST00000593074 MAP3K12Q12852 859 aa23.16■■□□□ 1.3
CLIP3-206ENST00000593074 TPTE2Q6XPS3 522 aa23.16■■□□□ 1.3
CLIP3-206ENST00000593074 STRBPQ96SI9 672 aaKnown RBP23.16■■□□□ 1.3
CLIP3-206ENST00000593074 COL24A1Q17RW2 1714 aa23.15■■□□□ 1.3
CLIP3-206ENST00000593074 BCAMP50895 628 aa23.15■■□□□ 1.3
CLIP3-206ENST00000593074 LEO1Q8WVC0 666 aaPredicted RBP23.15■■□□□ 1.3
CLIP3-206ENST00000593074 NLRP3Q96P20 1036 aa23.15■■□□□ 1.3
CLIP3-206ENST00000593074 GPHNQ9NQX3 736 aaPredicted RBP23.15■■□□□ 1.3
CLIP3-206ENST00000593074 ALX1Q15699 326 aa23.15■■□□□ 1.3
CLIP3-206ENST00000593074 TRAPPC3LQ5T215 181 aa23.15■■□□□ 1.3
CLIP3-206ENST00000593074 AIDAQ96BJ3 306 aa23.15■■□□□ 1.3
CLIP3-206ENST00000593074 SPATA32Q96LK8 384 aa23.15■■□□□ 1.3
CLIP3-206ENST00000593074 RFC4P35249 363 aa23.14■■□□□ 1.29
CLIP3-206ENST00000593074 TBC1D10CQ8IV04 446 aa23.14■■□□□ 1.29
CLIP3-206ENST00000593074 ESPNB1AK53 854 aa23.13■■□□□ 1.29
CLIP3-206ENST00000593074 AMIGO3Q86WK7 504 aa23.13■■□□□ 1.29
CLIP3-206ENST00000593074 RNF214Q8ND24 703 aa23.13■■□□□ 1.29
CLIP3-206ENST00000593074 NAP1L2Q9ULW6 460 aaPredicted RBP23.13■■□□□ 1.29
CLIP3-206ENST00000593074 CARMIL3Q8ND23 1372 aa23.13■■□□□ 1.29
CLIP3-206ENST00000593074 TIAM2Q8IVF5 1701 aa23.13■■□□□ 1.29
CLIP3-206ENST00000593074 MAGEB6Q8N7X4 407 aa23.13■■□□□ 1.29
CLIP3-206ENST00000593074 HPS5Q9UPZ3 1129 aa23.13■■□□□ 1.29
CLIP3-206ENST00000593074 ZNF804BA4D1E1 1349 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 TPRNQ4KMQ1 711 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 FAM196AQ6ZSG2 479 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 FUCA2Q9BTY2 467 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 TFIP11Q9UBB9 837 aaKnown RBP23.12■■□□□ 1.29
CLIP3-206ENST00000593074 KLF18A0A0U1RQI7 1052 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 TRDNQ13061 729 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 UBE4AQ14139 1066 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 MINPP1Q9UNW1 487 aa23.12■■□□□ 1.29
CLIP3-206ENST00000593074 LY75O60449 1722 aa23.11■■□□□ 1.29
CLIP3-206ENST00000593074 APPP05067 770 aa23.11■■□□□ 1.29
CLIP3-206ENST00000593074 GOLGA8BA8MQT2 603 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 DHX16O60231 1041 aaKnown RBP23.1■■□□□ 1.29
CLIP3-206ENST00000593074 MBD4O95243 580 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 FDPSP14324 419 aaKnown RBP23.1■■□□□ 1.29
CLIP3-206ENST00000593074 CLCN1P35523 988 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 CELF1Q92879 486 aaKnown RBP23.1■■□□□ 1.29
CLIP3-206ENST00000593074 EPB41L4AQ9HCS5 686 aaPredicted RBP23.1■■□□□ 1.29
CLIP3-206ENST00000593074 CFAP45Q9UL16 551 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 C4AP0C0L4 1744 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 C4BP0C0L5 1744 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 PATL2C9JE40 543 aaKnown RBP23.1■■□□□ 1.29
CLIP3-206ENST00000593074 RPS8P62241 208 aaKnown RBP23.1■■□□□ 1.29
CLIP3-206ENST00000593074 HS1BP3Q53T59 392 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 SBF2Q86WG5 1849 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 PNPLA7Q6ZV29 1317 aa23.1■■□□□ 1.29
CLIP3-206ENST00000593074 ADD1P35611 737 aaKnown RBP23.09■■□□□ 1.29
CLIP3-206ENST00000593074 UVSSAQ2YD98 709 aa23.09■■□□□ 1.29
CLIP3-206ENST00000593074 LRRC4BQ9NT99 713 aa23.09■■□□□ 1.29
CLIP3-206ENST00000593074 GNL3LQ9NVN8 582 aaKnown RBP23.09■■□□□ 1.29
CLIP3-206ENST00000593074 LIG1P18858 919 aa23.09■■□□□ 1.29
CLIP3-206ENST00000593074 DENND2AQ9ULE3 1009 aa23.09■■□□□ 1.29
CLIP3-206ENST00000593074 ANGEL1Q9UNK9 670 aaKnown RBP23.09■■□□□ 1.29
CLIP3-206ENST00000593074 TAF1P21675 1872 aa23.08■■□□□ 1.29
CLIP3-206ENST00000593074 CHD4Q14839 1912 aa23.08■■□□□ 1.29
CLIP3-206ENST00000593074 ATL3Q6DD88 541 aa23.08■■□□□ 1.29
CLIP3-206ENST00000593074 GIMAP6Q6P9H5 292 aa23.08■■□□□ 1.29
CLIP3-206ENST00000593074 CYB5R4Q7L1T6 521 aa23.08■■□□□ 1.29
CLIP3-206ENST00000593074 IFNL3Q8IZI9 196 aa23.08■■□□□ 1.29
CLIP3-206ENST00000593074 GOLGA6L4A6NEF3 574 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 NPHP1O15259 732 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 CAVIN4Q5BKX8 364 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 PGBD1Q96JS3 809 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 NEDD4P46934 1319 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 TAF1LQ8IZX4 1826 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 SH2B2O14492 632 aaPredicted RBP23.07■■□□□ 1.28
CLIP3-206ENST00000593074 ADRA2BP18089 450 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 GNAT2P19087 354 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 CCDC24Q8N4L8 307 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 NKX2-3Q8TAU0 364 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 NAPBQ9H115 298 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 ARMT1Q9H993 441 aa23.07■■□□□ 1.28
CLIP3-206ENST00000593074 COL1A1P02452 1464 aaPredicted RBP23.06■■□□□ 1.28
CLIP3-206ENST00000593074 GSG1L2A8MUP6 293 aa23.06■■□□□ 1.28
CLIP3-206ENST00000593074 GYG1P46976 350 aa23.06■■□□□ 1.28
CLIP3-206ENST00000593074 NUP62CLQ9H1M0 184 aa23.06■■□□□ 1.28
CLIP3-206ENST00000593074 LRP2BPQ9P2M1 347 aa23.06■■□□□ 1.28
CLIP3-206ENST00000593074 FOSBP53539 338 aa23.05■■□□□ 1.28
CLIP3-206ENST00000593074 KRT27Q7Z3Y8 459 aa23.05■■□□□ 1.28
CLIP3-206ENST00000593074 TMEM87BQ96K49 555 aa23.05■■□□□ 1.28
CLIP3-206ENST00000593074 DDX19AQ9NUU7 478 aaKnown RBP23.05■■□□□ 1.28
CLIP3-206ENST00000593074 B4E1Z4 1266 aa23.05■■□□□ 1.28
CLIP3-206ENST00000593074 LCORLQ8N3X6 602 aa23.05■■□□□ 1.28
CLIP3-206ENST00000593074 ANKRD2Q9GZV1 360 aa23.05■■□□□ 1.28
CLIP3-206ENST00000593074 WTIPA6NIX2 430 aaPredicted RBP23.04■■□□□ 1.28
CLIP3-206ENST00000593074 NFIXQ14938 502 aa23.04■■□□□ 1.28
CLIP3-206ENST00000593074 ILDR1Q86SU0 546 aaPredicted RBP23.04■■□□□ 1.28
CLIP3-206ENST00000593074 VPS37DQ86XT2 251 aa23.04■■□□□ 1.28
CLIP3-206ENST00000593074 RGS22Q8NE09 1264 aa23.04■■□□□ 1.28
CLIP3-206ENST00000593074 DACT1Q9NYF0 836 aa23.04■■□□□ 1.28
CLIP3-206ENST00000593074 RCOR1Q9UKL0 485 aa23.04■■□□□ 1.28
CLIP3-206ENST00000593074 IQSEC3Q9UPP2 1182 aaPredicted RBP23.04■■□□□ 1.28
CLIP3-206ENST00000593074 PPFIA3O75145 1194 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms