RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 HOXA10P31260 410 aaPredicted RBP8.19□□□□□ -1.1
SMCHD1-208ENST00000583344 GP2P55259 537 aaKnown RBP8.19□□□□□ -1.1
SMCHD1-208ENST00000583344 FAM129BQ96TA1 746 aa8.19□□□□□ -1.1
SMCHD1-208ENST00000583344 FAM95CA0A1B0GW59 222 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 ECEL1O95672 775 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 F13BP05160 661 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 USP11P51784 963 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 SOX4Q06945 474 aaPredicted RBP8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 NFKBIBQ15653 356 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 KIAA0319Q5VV43 1072 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 DTX1Q86Y01 620 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 RETREG2Q8NC44 543 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 TRIM56Q9BRZ2 755 aaKnown RBP8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 EHD4Q9H223 541 aa8.18□□□□□ -1.1
SMCHD1-208ENST00000583344 GPR182O15218 404 aa8.17□□□□□ -1.1
SMCHD1-208ENST00000583344 CPNE3O75131 537 aaKnown RBP8.17□□□□□ -1.1
SMCHD1-208ENST00000583344 ADH5P11766 374 aa8.17□□□□□ -1.1
SMCHD1-208ENST00000583344 POU4F3Q15319 338 aa8.17□□□□□ -1.1
SMCHD1-208ENST00000583344 TXNDC2Q86VQ3 553 aa8.17□□□□□ -1.1
SMCHD1-208ENST00000583344 ZNF576Q9H609 170 aa8.17□□□□□ -1.1
SMCHD1-208ENST00000583344 SUPT5HO00267 1087 aaKnown RBP8.16□□□□□ -1.1
SMCHD1-208ENST00000583344 PDE3BQ13370 1112 aa8.16□□□□□ -1.1
SMCHD1-208ENST00000583344 PAOXQ6QHF9 649 aa8.16□□□□□ -1.1
SMCHD1-208ENST00000583344 ATG3Q9NT62 314 aa8.16□□□□□ -1.1
SMCHD1-208ENST00000583344 PIM2Q9P1W9 311 aa8.16□□□□□ -1.1
SMCHD1-208ENST00000583344 ACTL7BQ9Y614 415 aa8.16□□□□□ -1.1
SMCHD1-208ENST00000583344 B3GALT4O96024 378 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 IGHA2P01877 340 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 CYP11A1P05108 521 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 NEFLP07196 543 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 ADMP35318 185 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 AKAP4Q5JQC9 854 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 TMC1Q8TDI8 760 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 NIF3L1Q9GZT8 377 aa8.15□□□□□ -1.1
SMCHD1-208ENST00000583344 EIF1AYO14602 144 aaKnown RBP8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 RAB6AP20340 208 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 ITPKAP23677 461 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 IRAK1P51617 712 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 CCDC74AQ96AQ1 378 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 KRTAP4-12Q9BQ66 201 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 OSBPL1AQ9BXW6 950 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 ABCB6Q9NP58 842 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 PRKAG2Q9UGJ0 569 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 LEMD3Q9Y2U8 911 aa8.14□□□□□ -1.11
SMCHD1-208ENST00000583344 COL17A1Q9UMD9 1497 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 EIF4EBP3O60516 100 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 DYMQ7RTS9 669 aa8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 GIMAP7Q8NHV1 300 aa8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 EZH1Q92800 747 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 TBC1D32Q96NH3 1257 aa8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 CORO1BQ9BR76 489 aa8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 AP4E1Q9UPM8 1137 aa8.13□□□□□ -1.11
SMCHD1-208ENST00000583344 WNT11O96014 354 aa8.12□□□□□ -1.11
SMCHD1-208ENST00000583344 YIPF2Q9BWQ6 316 aa8.12□□□□□ -1.11
SMCHD1-208ENST00000583344 RAD18Q9NS91 495 aa8.12□□□□□ -1.11
SMCHD1-208ENST00000583344 FAM105AQ9NUU6 356 aa8.12□□□□□ -1.11
SMCHD1-208ENST00000583344 FAM170BA6NMN3 283 aa8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 GADD45BO75293 160 aaPredicted RBP8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 NFICP08651 508 aa8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 FOSL1P15407 271 aa8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 ZNF157P51786 506 aaPredicted RBP8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 MSMPQ1L6U9 139 aa8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 ZAR1Q86SH2 424 aa8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 CITED4Q96RK1 184 aa8.11□□□□□ -1.11
SMCHD1-208ENST00000583344 FAAP100Q0VG06 881 aa8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 GRM2Q14416 872 aa8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 PDE3AQ14432 1141 aa8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 HP1BP3Q5SSJ5 553 aaPredicted RBP8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 PRPF40BQ6NWY9 871 aaKnown RBP8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 GLIS3Q8NEA6 775 aa8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 DDX54Q8TDD1 881 aaKnown RBP8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 EPS8L3Q8TE67 593 aaKnown RBP8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 GATA6Q92908 595 aa8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 DNAJC25Q9H1X3 360 aa8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 SEMA6CQ9H3T2 930 aa8.1□□□□□ -1.11
SMCHD1-208ENST00000583344 TMEM238LA0A1B0GVL6 79 aa8.09□□□□□ -1.11
SMCHD1-208ENST00000583344 AOC2O75106 756 aa8.09□□□□□ -1.11
SMCHD1-208ENST00000583344 TAL1P17542 331 aaPredicted RBP8.09□□□□□ -1.11
SMCHD1-208ENST00000583344 CCER1Q8TC90 406 aaPredicted RBP8.09□□□□□ -1.11
SMCHD1-208ENST00000583344 CSRNP1Q96S65 589 aa8.09□□□□□ -1.11
SMCHD1-208ENST00000583344 WDR18Q9BV38 432 aa8.09□□□□□ -1.11
SMCHD1-208ENST00000583344 ACSS3Q9H6R3 686 aa8.09□□□□□ -1.11
SMCHD1-208ENST00000583344 ASPAP45381 313 aa8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 PTPN12Q05209 780 aaKnown RBP8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 CPSF6Q16630 551 aaKnown RBP eCLIP8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 PI16Q6UXB8 463 aa8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 KRTAP1-3Q8IUG1 177 aa8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 METTL22Q9BUU2 404 aaPredicted RBP8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 RBCK1Q9BYM8 510 aa8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 ZC3H12CQ9C0D7 883 aaKnown RBP8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 PPP1R9AQ9ULJ8 1098 aa8.08□□□□□ -1.12
SMCHD1-208ENST00000583344 SOWAHDA6NJG2 315 aa8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 CYP26A1O43174 497 aa8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 DYNC1LI2O43237 492 aaPredicted RBP8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 AP3B2Q13367 1082 aa8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 MAP7Q14244 749 aa8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 WDR89Q96FK6 387 aaPredicted RBP8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 DMRTB1Q96MA1 342 aa8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 ZFYVE1Q9HBF4 777 aa8.07□□□□□ -1.12
SMCHD1-208ENST00000583344 LGR6Q9HBX8 967 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms