RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 HPS5Q9UPZ3 1129 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 KIF28PB7ZC32 967 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 CYP27B1O15528 508 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 AXDND1Q5T1B0 1012 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-208ENST00000582352 MB21D2Q8IYB1 491 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-208ENST00000582352 SYTL4Q96C24 671 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-208ENST00000582352 GJB4Q9NTQ9 266 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 CEP126Q9P2H0 1117 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.12□□□□□ -0.15
SHMT1-208ENST00000582352 CBFA2T2O43439 604 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 SYKP43405 635 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 FAM53CQ9NYF3 392 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 GLI3P10071 1580 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 NUP188Q5SRE5 1749 aa14.12□□□□□ -0.15
SHMT1-208ENST00000582352 SERPINC1P01008 464 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 FGAP02671 866 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 H2AFXP16104 143 aaPredicted RBP14.11□□□□□ -0.15
SHMT1-208ENST00000582352 MARCKSP29966 332 aaPredicted RBP14.11□□□□□ -0.15
SHMT1-208ENST00000582352 ISM2Q6H9L7 571 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 JMYQ8N9B5 988 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 PHLPP2Q6ZVD8 1323 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 DDX60Q8IY21 1712 aaKnown RBP14.11□□□□□ -0.15
SHMT1-208ENST00000582352 FOXP2O15409 715 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 GNL2Q13823 731 aaKnown RBP14.11□□□□□ -0.15
SHMT1-208ENST00000582352 BMS1Q14692 1282 aaKnown RBP14.11□□□□□ -0.15
SHMT1-208ENST00000582352 CCDC93Q567U6 631 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 TTLL7Q6ZT98 887 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 TIGD1Q96MW7 591 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 ATG3Q9NT62 314 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 ZNF446Q9NWS9 450 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 NBPF26B4DH59 902 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 ATP1A3P13637 1013 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 UBASH3AP57075 661 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 ETF1P62495 437 aaKnown RBP14.11□□□□□ -0.15
SHMT1-208ENST00000582352 MYL5Q02045 173 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 SLC39A14Q15043 492 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 CFAP100Q494V2 611 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 NBPF14Q5TI25 921 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 NBPF10Q6P3W6 841 aaKnown RBP14.11□□□□□ -0.15
SHMT1-208ENST00000582352 NBPF15Q8N660 670 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 DNAI1Q9UI46 699 aa14.11□□□□□ -0.15
SHMT1-208ENST00000582352 TMEM94Q12767 1356 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 ALS2Q96Q42 1657 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 ZNF213O14771 459 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 ANTXR2P58335 489 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 ARHGAP29Q52LW3 1261 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 HSP90AB3PQ58FF7 597 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 CCDC191Q8NCU4 936 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 APPBP2Q92624 585 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 PUS3Q9BZE2 481 aaKnown RBP14.1□□□□□ -0.15
SHMT1-208ENST00000582352 ZBTB3Q9H5J0 574 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 PKD1L3Q7Z443 1732 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 WDR19Q8NEZ3 1342 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 ZNF142P52746 1687 aaPredicted RBP14.1□□□□□ -0.15
SHMT1-208ENST00000582352 PLEKHG2Q9H7P9 1386 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 C4AP0C0L4 1744 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 C4BP0C0L5 1744 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 WDHD1O75717 1129 aaPredicted RBP14.1□□□□□ -0.15
SHMT1-208ENST00000582352 TRDNQ13061 729 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 LRRN4CLQ8ND94 238 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 ARGLU1Q9NWB6 273 aaPredicted RBP14.1□□□□□ -0.15
SHMT1-208ENST00000582352 AKAP2Q9Y2D5 859 aa14.1□□□□□ -0.15
SHMT1-208ENST00000582352 CPDO75976 1380 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 MST1RQ04912 1400 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 CCDC66A2RUB6 948 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 CDKL5O76039 1030 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 CCDC57Q2TAC2 916 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 VPS37DQ86XT2 251 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 MNS1Q8NEH6 495 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 ZMYM6O95789 1325 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 ADORA1P30542 326 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 CLCN6P51797 869 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 OLFM4Q6UX06 510 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 UBXN4Q92575 508 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 XAGE2Q96GT9 111 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 ALG1Q9BT22 464 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 TUBE1Q9UJT0 475 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 TAOK2Q9UL54 1235 aa14.09□□□□□ -0.15
SHMT1-208ENST00000582352 SRRTQ9BXP5 876 aaKnown RBP14.08□□□□□ -0.16
SHMT1-208ENST00000582352 PUS7LQ9H0K6 701 aaKnown RBP14.08□□□□□ -0.16
SHMT1-208ENST00000582352 HSD3B7Q9H2F3 369 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 PARP4Q9UKK3 1724 aaKnown RBP14.08□□□□□ -0.16
SHMT1-208ENST00000582352 C1orf167Q5SNV9 1468 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 GPAA1O43292 621 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 PPP6R2O75170 966 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 TOP1P11387 765 aaKnown RBP14.08□□□□□ -0.16
SHMT1-208ENST00000582352 METAP2P50579 478 aaKnown RBP eCLIP14.08□□□□□ -0.16
SHMT1-208ENST00000582352 PNOCQ13519 176 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 CPLX2Q6PUV4 134 aaKnown RBP14.08□□□□□ -0.16
SHMT1-208ENST00000582352 RGS22Q8NE09 1264 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 ST7Q9NRC1 585 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 ANGEL1Q9UNK9 670 aaKnown RBP14.08□□□□□ -0.16
SHMT1-208ENST00000582352 MYH7P12883 1935 aa14.08□□□□□ -0.16
SHMT1-208ENST00000582352 FAM193AP78312 1265 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 CREBRFQ8IUR6 639 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 HPSEQ9Y251 543 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 ZSCAN12O43309 604 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 MYO1BO43795 1136 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 ZAP70P43403 619 aa14.07□□□□□ -0.16
SHMT1-208ENST00000582352 TAF7LQ5H9L4 462 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms