RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 FAM20CQ8IXL6 584 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 Q8N3U1 123 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 SMG8Q8ND04 991 aaKnown RBP5.84□□□□□ -1.47
NUP88-209ENST00000574855 TMPRSS13Q9BYE2 586 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 ZNF576Q9H609 170 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 SUGCTQ9HAC7 445 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 SCO2A0A1W2PP80 73 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 GAS2O43903 313 aaKnown RBP5.83□□□□□ -1.48
NUP88-209ENST00000574855 B3GALT4O96024 378 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 BMP3P12645 472 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 MAOBP27338 520 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 RPS26P11Q5JNZ5 115 aaPredicted RBP5.83□□□□□ -1.48
NUP88-209ENST00000574855 HP1BP3Q5SSJ5 553 aaPredicted RBP5.83□□□□□ -1.48
NUP88-209ENST00000574855 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.83□□□□□ -1.48
NUP88-209ENST00000574855 CLEC10AQ8IUN9 316 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 KCNF1Q9H3M0 494 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 ABCB6Q9NP58 842 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 HIF3AQ9Y2N7 669 aa5.83□□□□□ -1.48
NUP88-209ENST00000574855 PNMA6FA0A0J9YX94 578 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 DLGAP3O95886 979 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 PDIA4P13667 645 aaKnown RBP5.82□□□□□ -1.48
NUP88-209ENST00000574855 PREPP48147 710 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 POU4F3Q15319 338 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 ENOX2Q16206 610 aaKnown RBP5.82□□□□□ -1.48
NUP88-209ENST00000574855 KRTAP4-12Q9BQ66 201 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 FAM83CQ9BQN1 747 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 CORO1BQ9BR76 489 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 NRSN2Q9GZP1 204 aa5.82□□□□□ -1.48
NUP88-209ENST00000574855 IGLV1-40P01703 118 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 XRCC5P13010 732 aaKnown RBP5.81□□□□□ -1.48
NUP88-209ENST00000574855 FCGRTP55899 365 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.81□□□□□ -1.48
NUP88-209ENST00000574855 DTHD1Q6ZMT9 781 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 BEND4Q6ZU67 534 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 TRIM42Q8IWZ5 723 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 GLIS3Q8NEA6 775 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 ASB16Q96NS5 453 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 BCO2Q9BYV7 579 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 RNF112Q9ULX5 631 aa5.81□□□□□ -1.48
NUP88-209ENST00000574855 HMX2A2RU54 273 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 TIAF1O95411 115 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 DRD2P14416 443 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 MAPK8P45983 427 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 USP11P51784 963 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 SOX4Q06945 474 aaPredicted RBP5.8□□□□□ -1.48
NUP88-209ENST00000574855 NFIAQ12857 509 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 AP3B2Q13367 1082 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 ARTNQ5T4W7 220 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 RNF43Q68DV7 783 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 PI16Q6UXB8 463 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 AEBP1Q8IUX7 1158 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 C7orf69Q9H7B7 122 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 RAD18Q9NS91 495 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 PODXL2Q9NZ53 605 aa5.8□□□□□ -1.48
NUP88-209ENST00000574855 BTBD11A6QL63 1104 aa5.79□□□□□ -1.48
NUP88-209ENST00000574855 MAP4P27816 1152 aaKnown RBP5.79□□□□□ -1.48
NUP88-209ENST00000574855 RXRBP28702 533 aa5.79□□□□□ -1.48
NUP88-209ENST00000574855 ZNF157P51786 506 aaPredicted RBP5.79□□□□□ -1.48
NUP88-209ENST00000574855 PPP2R3AQ06190 1150 aa5.79□□□□□ -1.48
NUP88-209ENST00000574855 FMR1Q06787 632 aaKnown RBP eCLIP5.79□□□□□ -1.48
NUP88-209ENST00000574855 NXPE4Q6UWF7 544 aa5.79□□□□□ -1.48
NUP88-209ENST00000574855 FBF1Q8TES7 1133 aa5.79□□□□□ -1.48
NUP88-209ENST00000574855 DBNDD2Q9BQY9 259 aa5.79□□□□□ -1.48
NUP88-209ENST00000574855 TRIM56Q9BRZ2 755 aaKnown RBP5.79□□□□□ -1.48
NUP88-209ENST00000574855 ZFP64Q9NPA5 681 aa5.79□□□□□ -1.48
NUP88-209ENST00000574855 ATP2B2Q01814 1243 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 FAAP100Q0VG06 881 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 LRP8Q14114 963 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 SGO2Q562F6 1265 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 ALG1LQ6GMV1 187 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 YIPF2Q9BWQ6 316 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 SRCIN1Q9C0H9 1055 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 TMEM39AQ9NV64 488 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 AKAP2Q9Y2D5 859 aa5.78□□□□□ -1.48
NUP88-209ENST00000574855 GIPC1O14908 333 aa5.77□□□□□ -1.49
NUP88-209ENST00000574855 HYAL3O43820 417 aaPredicted RBP5.77□□□□□ -1.49
NUP88-209ENST00000574855 CTSBP07858 339 aa5.77□□□□□ -1.49
NUP88-209ENST00000574855 ADH5P11766 374 aa5.77□□□□□ -1.49
NUP88-209ENST00000574855 HNRNPUQ00839 825 aaKnown RBP eCLIP5.77□□□□□ -1.49
NUP88-209ENST00000574855 PDE3AQ14432 1141 aa5.77□□□□□ -1.49
NUP88-209ENST00000574855 AKAP4Q5JQC9 854 aa5.77□□□□□ -1.49
NUP88-209ENST00000574855 C2CD4AQ8NCU7 369 aaPredicted RBP5.77□□□□□ -1.49
NUP88-209ENST00000574855 GPN3Q9UHW5 284 aaPredicted RBP5.77□□□□□ -1.49
NUP88-209ENST00000574855 FAM95CA0A1B0GW59 222 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 AOC2O75106 756 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 ECEL1O95672 775 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 SLFN14P0C7P3 912 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 GSTT1P30711 240 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 NFKBIBQ15653 356 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 PAOXQ6QHF9 649 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 DYMQ7RTS9 669 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 NBPF11Q86T75 865 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 GIMAP7Q8NHV1 300 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 FBLIM1Q8WUP2 373 aa5.76□□□□□ -1.49
NUP88-209ENST00000574855 SYNGAP1Q96PV0 1343 aa5.75□□□□□ -1.49
NUP88-209ENST00000574855 CDPF1Q6NVV7 123 aa5.75□□□□□ -1.49
NUP88-209ENST00000574855 SND1Q7KZF4 910 aaKnown RBP eCLIP5.75□□□□□ -1.49
NUP88-209ENST00000574855 ZDHHC13Q8IUH4 622 aa5.75□□□□□ -1.49
NUP88-209ENST00000574855 WWC3Q9ULE0 1092 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms