RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 MYO9BQ13459 2157 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 DDX60Q8IY21 1712 aaKnown RBP9.26□□□□□ -0.93
CHD3-213ENST00000571249 BMP1P13497 986 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 FLT3LGP49771 235 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 NHLH1Q02575 133 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 LRRC26Q2I0M4 334 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 DACT2Q5SW24 774 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 HELBQ8NG08 1087 aaPredicted RBP9.26□□□□□ -0.93
CHD3-213ENST00000571249 FBXW7Q969H0 707 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 POLR3GLQ9BT43 218 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 AOX1Q06278 1338 aa9.26□□□□□ -0.93
CHD3-213ENST00000571249 CEMIPQ8WUJ3 1361 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 WDHD1O75717 1129 aaPredicted RBP9.25□□□□□ -0.93
CHD3-213ENST00000571249 VGLL4Q14135 290 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 PDE3AQ14432 1141 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 CCDC85BQ15834 202 aaPredicted RBP9.25□□□□□ -0.93
CHD3-213ENST00000571249 SUPT20HL1Q3ZLR7 823 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 KIAA0825Q8IV33 1275 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 CDAN1Q8IWY9 1227 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 ANKLE1Q8NAG6 615 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 GAS2L2Q8NHY3 880 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.25□□□□□ -0.93
CHD3-213ENST00000571249 ANKIB1Q9P2G1 1089 aa9.25□□□□□ -0.93
CHD3-213ENST00000571249 ANKRD36CQ5JPF3 1778 aa9.24□□□□□ -0.93
CHD3-213ENST00000571249 CLRN2A0PK11 232 aa9.24□□□□□ -0.93
CHD3-213ENST00000571249 GTPBP6O43824 516 aaPredicted RBP9.24□□□□□ -0.93
CHD3-213ENST00000571249 GPR37L1O60883 481 aa9.24□□□□□ -0.93
CHD3-213ENST00000571249 SMAD3P84022 425 aaKnown RBP9.24□□□□□ -0.93
CHD3-213ENST00000571249 ZBTB38Q8NAP3 1195 aaPredicted RBP9.24□□□□□ -0.93
CHD3-213ENST00000571249 IL27Q8NEV9 243 aa9.24□□□□□ -0.93
CHD3-213ENST00000571249 LBHD1Q9BQE6 289 aaPredicted RBP9.24□□□□□ -0.93
CHD3-213ENST00000571249 MIS18AQ9NYP9 233 aa9.24□□□□□ -0.93
CHD3-213ENST00000571249 PODXL2Q9NZ53 605 aa9.24□□□□□ -0.93
CHD3-213ENST00000571249 TRMT112Q9UI30 125 aaKnown RBP9.24□□□□□ -0.93
CHD3-213ENST00000571249 GGA1Q9UJY5 639 aa9.24□□□□□ -0.93
CHD3-213ENST00000571249 ZFHX2Q9C0A1 2572 aaPredicted RBP9.24□□□□□ -0.93
CHD3-213ENST00000571249 COL3A1P02461 1466 aaPredicted RBP9.23□□□□□ -0.93
CHD3-213ENST00000571249 SMIM22K7EJ46 135 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 KRT37O76014 449 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 CETPP11597 493 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 CAPN2P17655 700 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 FCGRTP55899 365 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 RPS8P62241 208 aaKnown RBP9.23□□□□□ -0.93
CHD3-213ENST00000571249 TFF2Q03403 129 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 TRIM32Q13049 653 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 NLRP10Q86W26 655 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 PXYLP1Q8TE99 480 aa9.23□□□□□ -0.93
CHD3-213ENST00000571249 PSME4Q14997 1843 aa9.22□□□□□ -0.93
CHD3-213ENST00000571249 REV3LO60673 3130 aa9.22□□□□□ -0.93
CHD3-213ENST00000571249 IRF6O14896 467 aa9.22□□□□□ -0.93
CHD3-213ENST00000571249 KCNQ1P51787 676 aa9.22□□□□□ -0.93
CHD3-213ENST00000571249 PHOX2BQ99453 314 aa9.22□□□□□ -0.93
CHD3-213ENST00000571249 THUMPD2Q9BTF0 503 aaKnown RBP9.22□□□□□ -0.93
CHD3-213ENST00000571249 VEZTQ9HBM0 779 aa9.22□□□□□ -0.93
CHD3-213ENST00000571249 OTOFQ9HC10 1997 aa9.22□□□□□ -0.93
CHD3-213ENST00000571249 DDX60LQ5H9U9 1706 aaKnown RBP9.22□□□□□ -0.93
CHD3-213ENST00000571249 PTPRZ1P23471 2315 aaPredicted RBP9.21□□□□□ -0.93
CHD3-213ENST00000571249 ATRXP46100 2492 aa9.21□□□□□ -0.93
CHD3-213ENST00000571249 COL6A1P12109 1028 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 MAP3K9P80192 1104 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 RASA3Q14644 834 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 MCM10Q7L590 875 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 FBXL18Q96ME1 805 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 PANK3Q9H999 370 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 ZCCHC17Q9NP64 241 aaKnown RBP9.21□□□□□ -0.94
CHD3-213ENST00000571249 SEC31BQ9NQW1 1179 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 PPP2R3BQ9Y5P8 575 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 SH3TC1Q8TE82 1336 aa9.21□□□□□ -0.94
CHD3-213ENST00000571249 COL1A1P02452 1464 aaPredicted RBP9.21□□□□□ -0.94
CHD3-213ENST00000571249 C5orf42Q9H799 3197 aa9.2□□□□□ -0.94
CHD3-213ENST00000571249 PDHXO00330 501 aa9.2□□□□□ -0.94
CHD3-213ENST00000571249 DIAPH1O60610 1272 aaKnown RBP9.2□□□□□ -0.94
CHD3-213ENST00000571249 DCTN1Q14203 1278 aa9.2□□□□□ -0.94
CHD3-213ENST00000571249 SF3B3Q15393 1217 aaKnown RBP9.2□□□□□ -0.94
CHD3-213ENST00000571249 DLGAP5Q15398 846 aa9.2□□□□□ -0.94
CHD3-213ENST00000571249 PHACTR3Q96KR7 559 aa9.2□□□□□ -0.94
CHD3-213ENST00000571249 PRMT6Q96LA8 375 aaPredicted RBP9.2□□□□□ -0.94
CHD3-213ENST00000571249 OGDHLQ9ULD0 1010 aa9.2□□□□□ -0.94
CHD3-213ENST00000571249 ZNF804BA4D1E1 1349 aa9.2□□□□□ -0.94
CHD3-213ENST00000571249 SPDYE5A6NIY4 337 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 CYP2C8P10632 490 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 BCRP11274 1271 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 ZEB1P37275 1124 aaPredicted RBP9.19□□□□□ -0.94
CHD3-213ENST00000571249 FOXK2Q01167 660 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 SNAPC2Q13487 334 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 ADGRE1Q14246 886 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 GSE1Q14687 1217 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 RTL5Q5HYW3 569 aaPredicted RBP9.19□□□□□ -0.94
CHD3-213ENST00000571249 STRIP1Q5VSL9 837 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 MTMR14Q8NCE2 650 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.19□□□□□ -0.94
CHD3-213ENST00000571249 ZNF576Q9H609 170 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 CHD9Q3L8U1 2897 aa9.19□□□□□ -0.94
CHD3-213ENST00000571249 ANXA1P04083 346 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 U2AF1L5P0DN76 240 aaPredicted RBP9.18□□□□□ -0.94
CHD3-213ENST00000571249 U2AF1Q01081 240 aaKnown RBP eCLIP9.18□□□□□ -0.94
CHD3-213ENST00000571249 IRF5Q13568 498 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 AKNAD1Q5T1N1 836 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 TTLL5Q6EMB2 1281 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 TXNRD3Q86VQ6 643 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms