RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-208	ENST00000570874	ASAP1	Q9ULH1	1129 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	ODF2L	Q9ULJ1	636 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	MAFB	Q9Y5Q3	323 aa	Predicted RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	MRVI1	Q9Y6F6	885 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	COL14A1	Q05707	1796 aa	Known RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	NCAPD2	Q15021	1401 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	NUP188	Q5SRE5	1749 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	MEGF6	O75095	1541 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	SBF2	Q86WG5	1849 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SPATA31A3	Q5VYP0	1347 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	AHDC1	Q5TGY3	1603 aa	Predicted RBP	4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	MYH3	P11055	1940 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	TMEM238L	A0A1B0GVL6	79 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	GOLGA6L6	A8MZA4	724 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SMAP	O00193	183 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ZNF853	P0CG23	659 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SSTR3	P32745	418 aa	Predicted RBP	4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	TDO2	P48775	406 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ARID5A	Q03989	594 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	FAM160A1	Q05DH4	1040 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	PDIA6	Q15084	440 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	PPP4R4	Q6NUP7	873 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ARHGEF25	Q86VW2	580 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ANKRD13B	Q86YJ7	626 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	TMEM87A	Q8NBN3	555 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SSH1	Q8WYL5	1049 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	RNF34	Q969K3	372 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SLC39A13	Q96H72	371 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	TMUB1	Q9BVT8	246 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SRRT	Q9BXP5	876 aa	Known RBP	4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SEZ6L	Q9BYH1	1024 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	LRRC27	Q9C0I9	530 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	PNN	Q9H307	717 aa	Known RBP	4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	CXorf56	Q9H5V9	222 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	GPCPD1	Q9NPB8	672 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ZNF69	Q9UC07	566 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ACAD8	Q9UKU7	415 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	NUP98	P52948	1817 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	SPEF2	Q9C093	1822 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ABCC6	O95255	1503 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	KIF24	Q5T7B8	1368 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	ANKRD36C	Q5JPF3	1778 aa		4.25	□□□□□ -1.73
SMG6-208	ENST00000570874	IL16	Q14005	1332 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	NPHP3	Q7Z494	1330 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	NWD2	Q9ULI1	1742 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	BRWD3	Q6RI45	1802 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	VAMP4	O75379	141 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	ITGBL1	O95965	494 aa	Predicted RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	MYL1	P05976	194 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	FECH	P22830	423 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	MAPK1	P28482	360 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	MAP2K1	Q02750	393 aa	Predicted RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	TMEM95	Q3KNT9	176 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	PLEKHG4	Q58EX7	1191 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	SYCP2L	Q5T4T6	812 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	LCA5	Q86VQ0	697 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	LMNTD2	Q8IXW0	634 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	ANKRD24	Q8TF21	1146 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	STK32A	Q8WU08	396 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	CCDC47	Q96A33	483 aa	Known RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	ZNF830	Q96NB3	372 aa	Predicted RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	UCN2	Q96RP3	112 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	PAIP2	Q9BPZ3	127 aa	Known RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	IER2	Q9BTL4	223 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	ACBD3	Q9H3P7	528 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	AS3MT	Q9HBK9	375 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	SMC4	Q9NTJ3	1288 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	RBM28	Q9NW13	759 aa	Known RBP	4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	POLG2	Q9UHN1	485 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	ZMIZ1	Q9ULJ6	1067 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	NDUFB9	Q9Y6M9	179 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	KIAA0232	Q92628	1395 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	MAP3K5	Q99683	1374 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	TJP1	Q07157	1748 aa		4.24	□□□□□ -1.73
SMG6-208	ENST00000570874	MYH14	Q7Z406	1995 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	SOS2	Q07890	1332 aa	Predicted RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	KDM2B	Q8NHM5	1336 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	RGS12	O14924	1447 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	KDM6A	O15550	1401 aa	Predicted RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	DYTN	A2CJ06	578 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	PABPN1L	A6NDY0	278 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874		A6NJY4	79 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	KCNQ3	O43525	872 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	RNASEH2A	O75792	299 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	IGHD	P01880	384 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	TGFB3	P10600	412 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	TRIM27	P14373	513 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	CTH	P32929	405 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	GNAI1	P63096	354 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	HLTF	Q14527	1009 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	ALDH1L2	Q3SY69	923 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	C1QTNF12	Q5T7M4	302 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	LARP1B	Q659C4	914 aa	Known RBP	4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	CCDC70	Q6NSX1	233 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	UBE2Q1	Q7Z7E8	422 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	CHCHD4	Q8N4Q1	142 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	MPND	Q8N594	471 aa		4.23	□□□□□ -1.73
SMG6-208	ENST00000570874	MRPL50	Q8N5N7	158 aa	Known RBP	4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms