RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 RNF187Q5TA31 235 aaPredicted RBP3.98□□□□□ -1.77
VPS35-209ENST00000568642 NBPF14Q5TI25 921 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 KRBA2Q6ZNG9 492 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 JDP2Q8WYK2 163 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 APBA2Q99767 749 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 SENP7Q9BQF6 1050 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 SUV39H2Q9H5I1 410 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 GEMIN8Q9NWZ8 242 aaKnown RBP3.98□□□□□ -1.77
VPS35-209ENST00000568642 EID1Q9Y6B2 187 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 CCDC189A1A4V9 331 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 ZBBXA8MT70 800 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 PRC1O43663 620 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 SH3BP5O60239 455 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 S100BP04271 92 aaPredicted RBP3.97□□□□□ -1.77
VPS35-209ENST00000568642 MASP1P48740 699 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 XPCQ01831 940 aaPredicted RBP3.97□□□□□ -1.77
VPS35-209ENST00000568642 EHHADHQ08426 723 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 GRIN2CQ14957 1233 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 KRT27Q7Z3Y8 459 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 ALYREFQ86V81 257 aaKnown RBP3.97□□□□□ -1.77
VPS35-209ENST00000568642 LILRB2Q8N423 598 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 PLPP7Q8NBV4 271 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 PNISRQ8TF01 805 aaKnown RBP3.97□□□□□ -1.77
VPS35-209ENST00000568642 ZNF594Q96JF6 807 aaPredicted RBP3.97□□□□□ -1.77
VPS35-209ENST00000568642 SCYL1Q96KG9 808 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 CCDC87Q9NVE4 849 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 BSDC1Q9NW68 430 aaPredicted RBP3.97□□□□□ -1.77
VPS35-209ENST00000568642 PCDHGA11Q9Y5H2 935 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 MYO5CQ9NQX4 1742 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 PNPLA6Q8IY17 1366 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 MAST1Q9Y2H9 1570 aa3.97□□□□□ -1.77
VPS35-209ENST00000568642 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.96□□□□□ -1.78
VPS35-209ENST00000568642 SFI1A8K8P3 1242 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 SHISA8B8ZZ34 492 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 OIP5O43482 229 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 PDE6BP35913 854 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 CDKN1CP49918 316 aaPredicted RBP3.96□□□□□ -1.78
VPS35-209ENST00000568642 BIRC2Q13490 618 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 DHX8Q14562 1220 aaKnown RBP3.96□□□□□ -1.78
VPS35-209ENST00000568642 FAM26DQ5JW98 314 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 NBPF6Q5VWK0 638 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 NBPF11Q86T75 865 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 JAMLQ86YT9 394 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 SEPT12Q8IYM1 358 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 CACTIN-AS1Q8N1I8 211 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 SLC17A8Q8NDX2 589 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 HELQQ8TDG4 1101 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 ZNF837Q96EG3 531 aaPredicted RBP3.96□□□□□ -1.78
VPS35-209ENST00000568642 NBPF4Q96M43 638 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 AVENQ9NQS1 362 aaPredicted RBP3.96□□□□□ -1.78
VPS35-209ENST00000568642 DNAAF2Q9NVR5 837 aaKnown RBP3.96□□□□□ -1.78
VPS35-209ENST00000568642 PRKAB1Q9Y478 270 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 PARD3Q8TEW0 1356 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 TNRQ92752 1358 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 KIDINS220Q9ULH0 1771 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 CACNA1GO43497 2377 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 A0A0C4DFX4 3053 aa3.96□□□□□ -1.78
VPS35-209ENST00000568642 MROH1Q8NDA8 1641 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 ARHGEF28Q8N1W1 1705 aaKnown RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 CROCC2H7BZ55 1655 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 SAMD9LQ8IVG5 1584 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 NKTRP30414 1462 aaKnown RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 NLRP1Q9C000 1473 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 F12P00748 615 aaPredicted RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 PDE3BQ13370 1112 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 ENOX2Q16206 610 aaKnown RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 NFE2Q16621 373 aaPredicted RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 TTC39BQ5VTQ0 682 aaPredicted RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 ZNF654Q8IZM8 581 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 RNF217Q8TC41 542 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 RASGRP4Q8TDF6 673 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 LRRC59Q96AG4 307 aaKnown RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 ALKBH8Q96BT7 664 aaKnown RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 FRMD6Q96NE9 622 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 CCDC85AQ96PX6 553 aaPredicted RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 INSM2Q96T92 566 aaPredicted RBP3.95□□□□□ -1.78
VPS35-209ENST00000568642 SNTG2Q9NY99 539 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 KCNG1Q9UIX4 513 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 MKL2Q9ULH7 1088 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 INPP5FQ9Y2H2 1132 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 EFCAB6Q5THR3 1501 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 PTCH1Q13635 1447 aa3.95□□□□□ -1.78
VPS35-209ENST00000568642 STK10O94804 968 aaKnown RBP3.94□□□□□ -1.78
VPS35-209ENST00000568642 TOMM70O94826 608 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 FAM163BP0C2L3 166 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 HOXB4P17483 251 aaPredicted RBP3.94□□□□□ -1.78
VPS35-209ENST00000568642 PAK2Q13177 524 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 SQSTM1Q13501 440 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 AAMPQ13685 434 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 LRRC41Q15345 812 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 NFE2L2Q16236 605 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 RSPO4Q2I0M5 234 aaPredicted RBP3.94□□□□□ -1.78
VPS35-209ENST00000568642 TKFCQ3LXA3 575 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 ODR4Q5SWX8 454 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 C1orf229Q6ZS94 237 aaPredicted RBP3.94□□□□□ -1.78
VPS35-209ENST00000568642 Q6ZVU0 165 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 PRPF38AQ8NAV1 312 aaKnown RBP3.94□□□□□ -1.78
VPS35-209ENST00000568642 RELTQ969Z4 430 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 COL26A1Q96A83 441 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 MRFAP1L1Q96HT8 127 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms