RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PTPN12Q05209 780 aaKnown RBP5.52□□□□□ -1.53
VPS35-207ENST00000568191 CCDC74AQ96AQ1 378 aa5.52□□□□□ -1.53
VPS35-207ENST00000568191 TIMELESSQ9UNS1 1208 aa5.52□□□□□ -1.53
VPS35-207ENST00000568191 GNEQ9Y223 722 aaKnown RBP5.52□□□□□ -1.53
VPS35-207ENST00000568191 HMX2A2RU54 273 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 EIF1AYO14602 144 aaKnown RBP5.51□□□□□ -1.53
VPS35-207ENST00000568191 MAP4P27816 1152 aaKnown RBP5.51□□□□□ -1.53
VPS35-207ENST00000568191 SSTR4P31391 388 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 GRIA4P48058 902 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 AP3B2Q13367 1082 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 ORC1Q13415 861 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 ECM1Q16610 540 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 SPRED3Q2MJR0 410 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 RPS26P11Q5JNZ5 115 aaPredicted RBP5.51□□□□□ -1.53
VPS35-207ENST00000568191 HGSNATQ68CP4 663 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 ALKBH8Q96BT7 664 aaKnown RBP5.51□□□□□ -1.53
VPS35-207ENST00000568191 CSRNP1Q96S65 589 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 TCF12Q99081 682 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 KRTAP9-2Q9BYQ4 174 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 NPHS2Q9NP85 383 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 DCTN4Q9UJW0 460 aa5.51□□□□□ -1.53
VPS35-207ENST00000568191 FAM95CA0A1B0GW59 222 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 ITPKAP23677 461 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 MAOBP27338 520 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 PLCB3Q01970 1234 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 PPP2R3AQ06190 1150 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 SOX4Q06945 474 aaPredicted RBP5.5□□□□□ -1.53
VPS35-207ENST00000568191 NFKBIBQ15653 356 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 CPSF6Q16630 551 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS35-207ENST00000568191 USPL1Q5W0Q7 1092 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 ZSCAN29Q8IWY8 852 aaPredicted RBP5.5□□□□□ -1.53
VPS35-207ENST00000568191 PSMG3-AS1Q96PY0 264 aa5.5□□□□□ -1.53
VPS35-207ENST00000568191 TMEM238LA0A1B0GVL6 79 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 TIAF1O95411 115 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 B3GALT4O96024 378 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 XRCC5P13010 732 aaKnown RBP5.49□□□□□ -1.53
VPS35-207ENST00000568191 MAPK1P28482 360 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 MAP7Q14244 749 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 PDE3AQ14432 1141 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 ZNF423Q2M1K9 1284 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 PRPF40BQ6NWY9 871 aaKnown RBP5.49□□□□□ -1.53
VPS35-207ENST00000568191 DTHD1Q6ZMT9 781 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 OSBPL1AQ9BXW6 950 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 ZNF576Q9H609 170 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 LEMD3Q9Y2U8 911 aa5.49□□□□□ -1.53
VPS35-207ENST00000568191 KRTAP9-6A0A140TA67 174 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 WDR64B1ANS9 1081 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 GPR182O15218 404 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 SLFN14P0C7P3 912 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 KCNA1Q09470 495 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 SGO2Q562F6 1265 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 AKAP4Q5JQC9 854 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 DYMQ7RTS9 669 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 ZDHHC13Q8IUH4 622 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 SHKBP1Q8TBC3 707 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 MFSD14AQ96MC6 490 aa5.48□□□□□ -1.53
VPS35-207ENST00000568191 METTL22Q9BUU2 404 aaPredicted RBP5.48□□□□□ -1.53
VPS35-207ENST00000568191 TGFB1P01137 390 aa5.47□□□□□ -1.53
VPS35-207ENST00000568191 DRD2P14416 443 aa5.47□□□□□ -1.53
VPS35-207ENST00000568191 CD97P48960 835 aa5.47□□□□□ -1.53
VPS35-207ENST00000568191 CYP27A1Q02318 531 aa5.47□□□□□ -1.53
VPS35-207ENST00000568191 FBXL6Q8N531 539 aa5.47□□□□□ -1.53
VPS35-207ENST00000568191 FBLIM1Q8WUP2 373 aa5.47□□□□□ -1.53
VPS35-207ENST00000568191 PIM2Q9P1W9 311 aa5.47□□□□□ -1.53
VPS35-207ENST00000568191 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.46□□□□□ -1.54
VPS35-207ENST00000568191 ADH5P11766 374 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 ATP2B2Q01814 1243 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 DUSP27Q5VZP5 1158 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 TMC7Q7Z402 723 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 C2CD4AQ8NCU7 369 aaPredicted RBP5.46□□□□□ -1.54
VPS35-207ENST00000568191 ABCB6Q9NP58 842 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 TMEM39AQ9NV64 488 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 GPN3Q9UHW5 284 aaPredicted RBP5.46□□□□□ -1.54
VPS35-207ENST00000568191 AP4E1Q9UPM8 1137 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 SAMM50Q9Y512 469 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 SYNGAP1Q96PV0 1343 aa5.46□□□□□ -1.54
VPS35-207ENST00000568191 DLGAP3O95886 979 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 ASPAP45381 313 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 FCGRTP55899 365 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 GRM2Q14416 872 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 EPS8L3Q8TE67 593 aaKnown RBP5.45□□□□□ -1.54
VPS35-207ENST00000568191 FBF1Q8TES7 1133 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 TBC1D32Q96NH3 1257 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 EMILIN2Q9BXX0 1053 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 NRSN2Q9GZP1 204 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 PIDD1Q9HB75 910 aa5.45□□□□□ -1.54
VPS35-207ENST00000568191 PNMA6FA0A0J9YX94 578 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 KIAA1324LA8MWY0 1029 aaPredicted RBP5.44□□□□□ -1.54
VPS35-207ENST00000568191 GIPC1O14908 333 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 AOC2O75106 756 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 WNT11O96014 354 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 RAB6AP20340 208 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 ALG1LQ6GMV1 187 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 CDPF1Q6NVV7 123 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 EZH1Q92800 747 aaPredicted RBP5.44□□□□□ -1.54
VPS35-207ENST00000568191 BCO2Q9BYV7 579 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 SRCIN1Q9C0H9 1055 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 ATXN3LQ9H3M9 355 aa5.44□□□□□ -1.54
VPS35-207ENST00000568191 ANGEL1Q9UNK9 670 aaKnown RBP5.44□□□□□ -1.54
VPS35-207ENST00000568191 AKAP2Q9Y2D5 859 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms