RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 NUCKS1Q9H1E3 243 aaKnown RBP8.1□□□□□ -1.11
VPS39-209ENST00000568029 CCDC87Q9NVE4 849 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 PCDHGC4Q9Y5F7 938 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 KIF1BO60333 1816 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 FAM83GA6ND36 823 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 EFSO43281 561 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 IGHA2P01877 340 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 THBS1P07996 1170 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 AAMPQ13685 434 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 RIPOR1Q6ZS17 1223 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 ATCAYQ86WG3 371 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 ALKBH8Q96BT7 664 aaKnown RBP8.09□□□□□ -1.11
VPS39-209ENST00000568029 ZCCHC2Q9C0B9 1178 aaKnown RBP8.09□□□□□ -1.11
VPS39-209ENST00000568029 PPP1R1BQ9UD71 204 aaPredicted RBP8.09□□□□□ -1.11
VPS39-209ENST00000568029 CHD4Q14839 1912 aa8.09□□□□□ -1.11
VPS39-209ENST00000568029 ALS2Q96Q42 1657 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 ATXN7O15265 892 aaPredicted RBP8.08□□□□□ -1.12
VPS39-209ENST00000568029 EGFRP00533 1210 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 HSPA5P11021 654 aaKnown RBP8.08□□□□□ -1.12
VPS39-209ENST00000568029 NPAS3Q8IXF0 933 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 EDEM1Q92611 657 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 CEP63Q96MT8 703 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 HIRIP3Q9BW71 556 aaPredicted RBP8.08□□□□□ -1.12
VPS39-209ENST00000568029 NDFIP2Q9NV92 336 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 POLIQ9UNA4 740 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 FNDC3AQ9Y2H6 1198 aaKnown RBP8.08□□□□□ -1.12
VPS39-209ENST00000568029 CCDC144AA2RUR9 1427 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 KNDC1Q76NI1 1749 aa8.08□□□□□ -1.12
VPS39-209ENST00000568029 ANKRD33BA6NCL7 494 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 CCER2I3L3R5 266 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 TREHO43280 583 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 DNM1Q05193 864 aaKnown RBP8.07□□□□□ -1.12
VPS39-209ENST00000568029 DBN1Q16643 649 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 XKR5Q6UX68 686 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 TMC7Q7Z402 723 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 NPAS4Q8IUM7 802 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 GPR152Q8TDT2 470 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 NANOS1Q8WY41 292 aaKnown RBP8.07□□□□□ -1.12
VPS39-209ENST00000568029 EFCC1Q9HA90 598 aa8.07□□□□□ -1.12
VPS39-209ENST00000568029 RTCBQ9Y3I0 505 aaKnown RBP8.07□□□□□ -1.12
VPS39-209ENST00000568029 TECPR2O15040 1411 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 KCNQ2O43526 872 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 PPFIA3O75145 1194 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 APBA3O96018 575 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 TNP2Q05952 138 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 WAPLQ7Z5K2 1190 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 NUDT16Q96DE0 195 aaKnown RBP8.06□□□□□ -1.12
VPS39-209ENST00000568029 ZNF837Q96EG3 531 aaPredicted RBP8.06□□□□□ -1.12
VPS39-209ENST00000568029 CFHR5Q9BXR6 569 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 SPON1Q9HCB6 807 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 BRD7Q9NPI1 651 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 CUEDC1Q9NWM3 386 aaPredicted RBP8.06□□□□□ -1.12
VPS39-209ENST00000568029 BTG4Q9NY30 223 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 ATXN7L1Q9ULK2 861 aaPredicted RBP8.06□□□□□ -1.12
VPS39-209ENST00000568029 PHF24Q9UPV7 400 aa8.06□□□□□ -1.12
VPS39-209ENST00000568029 PHRF1Q9P1Y6 1649 aaKnown RBP8.06□□□□□ -1.12
VPS39-209ENST00000568029 DSC3Q14574 896 aa8.05□□□□□ -1.12
VPS39-209ENST00000568029 PDE12Q6L8Q7 609 aaKnown RBP8.05□□□□□ -1.12
VPS39-209ENST00000568029 KRT28Q7Z3Y7 464 aa8.05□□□□□ -1.12
VPS39-209ENST00000568029 KCNH4Q9UQ05 1017 aa8.05□□□□□ -1.12
VPS39-209ENST00000568029 KCNMB2Q9Y691 235 aa8.05□□□□□ -1.12
VPS39-209ENST00000568029 PEAK1Q9H792 1746 aa8.05□□□□□ -1.12
VPS39-209ENST00000568029 SPATA31A5Q5VU36 1347 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 SPATA31A7Q8IWB4 1347 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 ZBTB7AO95365 584 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 NEFLP07196 543 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 GRNP28799 593 aaKnown RBP8.04□□□□□ -1.12
VPS39-209ENST00000568029 FMR1Q06787 632 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS39-209ENST00000568029 NBPF8Q3BBV2 869 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 FOXR1Q6PIV2 292 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 TTC16Q8NEE8 873 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 NRXN1Q9ULB1 1477 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 RGPD3A6NKT7 1758 aaPredicted RBP8.04□□□□□ -1.12
VPS39-209ENST00000568029 RGPD4Q7Z3J3 1758 aa8.04□□□□□ -1.12
VPS39-209ENST00000568029 LRPPRCP42704 1394 aaKnown RBP8.03□□□□□ -1.12
VPS39-209ENST00000568029 PARD3Q8TEW0 1356 aa8.03□□□□□ -1.12
VPS39-209ENST00000568029 MAPTP10636 758 aaKnown RBP8.03□□□□□ -1.12
VPS39-209ENST00000568029 FGD1P98174 961 aa8.03□□□□□ -1.12
VPS39-209ENST00000568029 SBF2Q86WG5 1849 aa8.03□□□□□ -1.12
VPS39-209ENST00000568029 RBM47A0AV96 593 aaKnown RBP8.02□□□□□ -1.13
VPS39-209ENST00000568029 POTECB2RU33 542 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 GPR182O15218 404 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 BNIP3LO60238 219 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 TRIP4Q15650 581 aaPredicted RBP8.02□□□□□ -1.13
VPS39-209ENST00000568029 SV2AQ7L0J3 742 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 PTF1AQ7RTS3 328 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 TMC1Q8TDI8 760 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 TRERF1Q96PN7 1200 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 GGNBP2Q9H3C7 697 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 MARK1Q9P0L2 795 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 STK26Q9P289 416 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 NXF1Q9UBU9 619 aaKnown RBP8.02□□□□□ -1.13
VPS39-209ENST00000568029 LRRC37A3O60309 1634 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 DLC1Q96QB1 1528 aa8.02□□□□□ -1.13
VPS39-209ENST00000568029 KHNYNO15037 678 aaKnown RBP8.01□□□□□ -1.13
VPS39-209ENST00000568029 XYLBO75191 536 aa8.01□□□□□ -1.13
VPS39-209ENST00000568029 PLCB3Q01970 1234 aa8.01□□□□□ -1.13
VPS39-209ENST00000568029 FBXO33Q7Z6M2 555 aa8.01□□□□□ -1.13
VPS39-209ENST00000568029 CMTR1Q8N1G2 835 aaKnown RBP8.01□□□□□ -1.13
VPS39-209ENST00000568029 GTPBP3Q969Y2 492 aaKnown RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms