RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PLA2G12BQ9BX93 195 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 TMEM39BQ9GZU3 492 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 BIN2Q9UBW5 565 aaPredicted RBP9.36□□□□□ -0.91
VPS4A-203ENST00000564399 TTF2Q9UNY4 1162 aaKnown RBP9.36□□□□□ -0.91
VPS4A-203ENST00000564399 CHMP3Q9Y3E7 222 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 NR2E3Q9Y5X4 410 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 AK9Q5TCS8 1911 aa9.36□□□□□ -0.91
VPS4A-203ENST00000564399 MYBBP1AQ9BQG0 1328 aaKnown RBP9.35□□□□□ -0.91
VPS4A-203ENST00000564399 BRCA2P51587 3418 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 BTBD19C9JJ37 291 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 CSF1RP07333 972 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 HOXD10P28358 340 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 IFIT5Q13325 482 aaKnown RBP9.35□□□□□ -0.91
VPS4A-203ENST00000564399 GCKRQ14397 625 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 MFSD14BQ5SR56 506 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 TSPYL6Q8N831 410 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.35□□□□□ -0.91
VPS4A-203ENST00000564399 RAET1EQ8TD07 263 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 SHISA4Q96DD7 197 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 TEPSINQ96N21 525 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 MYH16Q9H6N6 1097 aa9.35□□□□□ -0.91
VPS4A-203ENST00000564399 IRS2Q9Y4H2 1338 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 SZT2Q5T011 3432 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 SPDYE5A6NIY4 337 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 APAF1O14727 1248 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 FMNL1O95466 1100 aaPredicted RBP9.34□□□□□ -0.91
VPS4A-203ENST00000564399 GRK4P32298 578 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 PSMC4P43686 418 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 SNAPC2Q13487 334 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 TAF7LQ5H9L4 462 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 G2E3Q7L622 706 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 ERO1BQ86YB8 467 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 DZIP1LQ8IYY4 767 aaKnown RBP9.34□□□□□ -0.91
VPS4A-203ENST00000564399 RNF208Q9H0X6 261 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 ZCCHC17Q9NP64 241 aaKnown RBP9.34□□□□□ -0.91
VPS4A-203ENST00000564399 SRRDQ9UH36 339 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 SERPINA10Q9UK55 444 aa9.34□□□□□ -0.91
VPS4A-203ENST00000564399 FAM205AQ6ZU69 1335 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 A0A1B0GUL6 1792 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 IRF6O14896 467 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 SLC4A2P04920 1241 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 GJB1P08034 283 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 CCL5P13501 91 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 CRKP46108 304 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 GJA8P48165 433 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 ZKSCAN4Q969J2 545 aaPredicted RBP9.33□□□□□ -0.92
VPS4A-203ENST00000564399 TRIM47Q96LD4 638 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 WRNIP1Q96S55 665 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 CPA4Q9UI42 421 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 RIPOR2Q9Y4F9 1068 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 CACNA1FO60840 1977 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 ARAP2Q8WZ64 1704 aa9.33□□□□□ -0.92
VPS4A-203ENST00000564399 ZBTB7BO15156 539 aaPredicted RBP9.32□□□□□ -0.92
VPS4A-203ENST00000564399 FARP2O94887 1054 aaPredicted RBP9.32□□□□□ -0.92
VPS4A-203ENST00000564399 OSBPP22059 807 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 CASP7P55210 303 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 UBXN2AP68543 259 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 FKBP5Q13451 457 aaPredicted RBP9.32□□□□□ -0.92
VPS4A-203ENST00000564399 C17orf99Q6UX52 265 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 LDHAL6AQ6ZMR3 332 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 LINS1Q8NG48 757 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 TDRD7Q8NHU6 1098 aaKnown RBP9.32□□□□□ -0.92
VPS4A-203ENST00000564399 DNAAF4Q8WXU2 420 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 TSR2Q969E8 191 aaKnown RBP9.32□□□□□ -0.92
VPS4A-203ENST00000564399 CNNM1Q9NRU3 951 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 TMOD2Q9NZR1 351 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 SNCAIPQ9Y6H5 919 aa9.32□□□□□ -0.92
VPS4A-203ENST00000564399 MYPNQ86TC9 1320 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 RANBP2P49792 3224 aaKnown RBP9.31□□□□□ -0.92
VPS4A-203ENST00000564399 DOCK3Q8IZD9 2030 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 EVI5O60447 810 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 CTGFP29279 349 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 HIBADHP31937 336 aaKnown RBP9.31□□□□□ -0.92
VPS4A-203ENST00000564399 GYG1P46976 350 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 CACNB3P54284 484 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 FLIIQ13045 1269 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 PPIL2Q13356 520 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 CCDC57Q2TAC2 916 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 DCAF15Q66K64 600 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 LMBR1LQ6UX01 489 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 U2AF1L4Q8WU68 220 aaKnown RBP9.31□□□□□ -0.92
VPS4A-203ENST00000564399 HOOK2Q96ED9 719 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 LRCH3Q96II8 777 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 ZNF594Q96JF6 807 aaPredicted RBP9.31□□□□□ -0.92
VPS4A-203ENST00000564399 PRO3102Q9H379 93 aa9.31□□□□□ -0.92
VPS4A-203ENST00000564399 A0A0C4DFX4 3053 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 MGAMO43451 1857 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 A0A1W2PPC1 479 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 PDHXO00330 501 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 SOX1O00570 391 aaPredicted RBP9.3□□□□□ -0.92
VPS4A-203ENST00000564399 FRAT2O75474 233 aaPredicted RBP9.3□□□□□ -0.92
VPS4A-203ENST00000564399 FOXO4P98177 505 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 CHAF1AQ13111 956 aaPredicted RBP9.3□□□□□ -0.92
VPS4A-203ENST00000564399 UBE4AQ14139 1066 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 TWISTNBQ3B726 338 aaPredicted RBP9.3□□□□□ -0.92
VPS4A-203ENST00000564399 UBE2Q1Q7Z7E8 422 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 ANKRD23Q86SG2 305 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 VPS37DQ86XT2 251 aa9.3□□□□□ -0.92
VPS4A-203ENST00000564399 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.3□□□□□ -0.92
VPS4A-203ENST00000564399 IQSEC3Q9UPP2 1182 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms