RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 PATL2C9JE40 543 aaKnown RBP21.48■■□□□ 1.03
COMMD4-208ENST00000563220 E7EWF7 191 aa21.48■■□□□ 1.03
COMMD4-208ENST00000563220 APPP05067 770 aa21.48■■□□□ 1.03
COMMD4-208ENST00000563220 PRDX5P30044 214 aa21.48■■□□□ 1.03
COMMD4-208ENST00000563220 DEKP35659 375 aaKnown RBP21.48■■□□□ 1.03
COMMD4-208ENST00000563220 HAND2P61296 217 aa21.48■■□□□ 1.03
COMMD4-208ENST00000563220 NSUN4Q96CB9 384 aaKnown RBP21.48■■□□□ 1.03
COMMD4-208ENST00000563220 PRKAB2O43741 272 aa21.47■■□□□ 1.03
COMMD4-208ENST00000563220 IL1R1P14778 569 aa21.47■■□□□ 1.03
COMMD4-208ENST00000563220 MECOMQ03112 1051 aa21.47■■□□□ 1.03
COMMD4-208ENST00000563220 IMMTQ16891 758 aaKnown RBP21.47■■□□□ 1.03
COMMD4-208ENST00000563220 NAA16Q6N069 864 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-208ENST00000563220 MPNDQ8N594 471 aa21.47■■□□□ 1.03
COMMD4-208ENST00000563220 SLC16A10Q8TF71 515 aa21.47■■□□□ 1.03
COMMD4-208ENST00000563220 ALDH8A1Q9H2A2 487 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-208ENST00000563220 EPB41L4AQ9HCS5 686 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-208ENST00000563220 LRRC37AA6NMS7 1700 aa21.47■■□□□ 1.03
COMMD4-208ENST00000563220 SALL1Q9NSC2 1324 aa21.46■■□□□ 1.03
COMMD4-208ENST00000563220 GSG1L2A8MUP6 293 aa21.46■■□□□ 1.03
COMMD4-208ENST00000563220 ALX1Q15699 326 aa21.46■■□□□ 1.03
COMMD4-208ENST00000563220 IFNL3Q8IZI9 196 aa21.46■■□□□ 1.03
COMMD4-208ENST00000563220 WDR66Q8TBY9 1149 aa21.46■■□□□ 1.03
COMMD4-208ENST00000563220 CIZ1Q9ULV3 898 aaPredicted RBP21.46■■□□□ 1.03
COMMD4-208ENST00000563220 LARGE1O95461 756 aa21.45■■□□□ 1.02
COMMD4-208ENST00000563220 TOB2Q14106 344 aaPredicted RBP21.45■■□□□ 1.02
COMMD4-208ENST00000563220 RIOK1Q9BRS2 568 aaKnown RBP21.45■■□□□ 1.02
COMMD4-208ENST00000563220 LTBP1Q14766 1721 aa21.45■■□□□ 1.02
COMMD4-208ENST00000563220 MAGEB6P1A0A0J9YX57 407 aa21.45■■□□□ 1.02
COMMD4-208ENST00000563220 ZNF213O14771 459 aa21.45■■□□□ 1.02
COMMD4-208ENST00000563220 RIMBP2O15034 1052 aa21.45■■□□□ 1.02
COMMD4-208ENST00000563220 DPP8Q6V1X1 898 aaPredicted RBP21.45■■□□□ 1.02
COMMD4-208ENST00000563220 SLC4A4Q9Y6R1 1079 aa21.45■■□□□ 1.02
COMMD4-208ENST00000563220 CACNA1SQ13698 1873 aa21.45■■□□□ 1.02
COMMD4-208ENST00000563220 GNAT2P19087 354 aa21.44■■□□□ 1.02
COMMD4-208ENST00000563220 DYNLL1P63167 89 aaKnown RBP21.44■■□□□ 1.02
COMMD4-208ENST00000563220 GRIK5Q16478 980 aa21.44■■□□□ 1.02
COMMD4-208ENST00000563220 INTS4Q96HW7 963 aaKnown RBP21.44■■□□□ 1.02
COMMD4-208ENST00000563220 NBPF3Q9H094 633 aa21.44■■□□□ 1.02
COMMD4-208ENST00000563220 CWC22Q9HCG8 908 aaKnown RBP21.44■■□□□ 1.02
COMMD4-208ENST00000563220 TPCN1Q9ULQ1 816 aa21.44■■□□□ 1.02
COMMD4-208ENST00000563220 HMGB1P09429 215 aaKnown RBP21.43■■□□□ 1.02
COMMD4-208ENST00000563220 EXOSC10Q01780 885 aaKnown RBP21.43■■□□□ 1.02
COMMD4-208ENST00000563220 SPTY2D1Q68D10 685 aaPredicted RBP21.43■■□□□ 1.02
COMMD4-208ENST00000563220 DHX32Q7L7V1 743 aaKnown RBP21.43■■□□□ 1.02
COMMD4-208ENST00000563220 CNKSR1Q969H4 720 aa21.43■■□□□ 1.02
COMMD4-208ENST00000563220 NFKBIBQ15653 356 aa21.43■■□□□ 1.02
COMMD4-208ENST00000563220 TMX4Q9H1E5 349 aaPredicted RBP21.43■■□□□ 1.02
COMMD4-208ENST00000563220 ANKRD1Q15327 319 aa21.42■■□□□ 1.02
COMMD4-208ENST00000563220 ME3Q16798 604 aa21.42■■□□□ 1.02
COMMD4-208ENST00000563220 Q6ZUG5 572 aa21.42■■□□□ 1.02
COMMD4-208ENST00000563220 C7orf43Q8WVR3 580 aa21.42■■□□□ 1.02
COMMD4-208ENST00000563220 ZSCAN31Q96LW9 406 aaPredicted RBP21.42■■□□□ 1.02
COMMD4-208ENST00000563220 LRRC2Q9BYS8 371 aa21.42■■□□□ 1.02
COMMD4-208ENST00000563220 ZC3H12CQ9C0D7 883 aaKnown RBP21.42■■□□□ 1.02
COMMD4-208ENST00000563220 DUOX1Q9NRD9 1551 aa21.42■■□□□ 1.02
COMMD4-208ENST00000563220 ZMYM6O95789 1325 aa21.42■■□□□ 1.02
COMMD4-208ENST00000563220 LDHBP07195 334 aaKnown RBP21.41■■□□□ 1.02
COMMD4-208ENST00000563220 COA1Q9GZY4 146 aa21.41■■□□□ 1.02
COMMD4-208ENST00000563220 NAPBQ9H115 298 aa21.41■■□□□ 1.02
COMMD4-208ENST00000563220 ZNF219Q9P2Y4 722 aaPredicted RBP21.41■■□□□ 1.02
COMMD4-208ENST00000563220 C10orf71Q711Q0 1435 aa21.41■■□□□ 1.02
COMMD4-208ENST00000563220 TBC1D10CQ8IV04 446 aa21.41■■□□□ 1.02
COMMD4-208ENST00000563220 SDR42E1Q8WUS8 393 aa21.41■■□□□ 1.02
COMMD4-208ENST00000563220 ZBTB7AO95365 584 aa21.4■■□□□ 1.02
COMMD4-208ENST00000563220 ST3GAL1Q11201 340 aa21.4■■□□□ 1.02
COMMD4-208ENST00000563220 DZIP1Q86YF9 867 aaKnown RBP21.4■■□□□ 1.02
COMMD4-208ENST00000563220 SH2B1Q9NRF2 756 aaPredicted RBP21.4■■□□□ 1.02
COMMD4-208ENST00000563220 MYH13Q9UKX3 1938 aa21.39■■□□□ 1.02
COMMD4-208ENST00000563220 RAB3GAP1Q15042 981 aa21.39■■□□□ 1.02
COMMD4-208ENST00000563220 TMED8Q6PL24 325 aaPredicted RBP21.39■■□□□ 1.02
COMMD4-208ENST00000563220 CHST3Q7LGC8 479 aa21.39■■□□□ 1.02
COMMD4-208ENST00000563220 NACAP1Q9BZK3 213 aa21.39■■□□□ 1.02
COMMD4-208ENST00000563220 AATFQ9NY61 560 aaKnown RBP eCLIP21.39■■□□□ 1.02
COMMD4-208ENST00000563220 IGSF3O75054 1194 aa21.39■■□□□ 1.01
COMMD4-208ENST00000563220 MB21D2Q8IYB1 491 aaPredicted RBP21.39■■□□□ 1.01
COMMD4-208ENST00000563220 NKX2-3Q8TAU0 364 aa21.39■■□□□ 1.01
COMMD4-208ENST00000563220 SLX4Q8IY92 1834 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 TDO2P48775 406 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 DOK7Q18PE1 504 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 CCDC83Q8IWF9 413 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 NECAB1Q8N987 351 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 NCOA7Q8NI08 942 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 AGXT2Q9BYV1 514 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 TACC3Q9Y6A5 838 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 FAM205AQ6ZU69 1335 aa21.38■■□□□ 1.01
COMMD4-208ENST00000563220 GTF2IP78347 998 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 CTDSPL2Q05D32 466 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 PKP1Q13835 747 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 BRF1Q92994 677 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 EYA3Q99504 573 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 INCENPQ9NQS7 918 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 ATF5Q9Y2D1 282 aaPredicted RBP21.37■■□□□ 1.01
COMMD4-208ENST00000563220 KCNA3P22001 575 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 DIXDC1Q155Q3 683 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 MFSD14BQ5SR56 506 aa21.37■■□□□ 1.01
COMMD4-208ENST00000563220 UPF1Q92900 1129 aaKnown RBP eCLIP21.37■■□□□ 1.017e-14■■■■■ 92.7
COMMD4-208ENST00000563220 ANTXR2P58335 489 aa21.36■■□□□ 1.01
COMMD4-208ENST00000563220 TNPO1Q92973 898 aaKnown RBP21.36■■□□□ 1.01
COMMD4-208ENST00000563220 RTFDC1Q9BY42 306 aaPredicted RBP21.36■■□□□ 1.01
COMMD4-208ENST00000563220 DPEP1P16444 411 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms