RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.18■□□□□ 0.98
SNX1-208ENST00000559844 MYH13Q9UKX3 1938 aa21.18■□□□□ 0.98
SNX1-208ENST00000559844 IRS2Q9Y4H2 1338 aa21.18■□□□□ 0.98
SNX1-208ENST00000559844 RNF113AO15541 343 aaKnown RBP21.17■□□□□ 0.98
SNX1-208ENST00000559844 GYG1P46976 350 aa21.17■□□□□ 0.98
SNX1-208ENST00000559844 ALDH8A1Q9H2A2 487 aaPredicted RBP21.17■□□□□ 0.98
SNX1-208ENST00000559844 CHD4Q14839 1912 aa21.17■□□□□ 0.98
SNX1-208ENST00000559844 LTBP3Q9NS15 1303 aa21.17■□□□□ 0.98
SNX1-208ENST00000559844 PKP1Q13835 747 aa21.17■□□□□ 0.98
SNX1-208ENST00000559844 ANKRD1Q15327 319 aa21.17■□□□□ 0.98
SNX1-208ENST00000559844 AOC3Q16853 763 aa21.17■□□□□ 0.98
SNX1-208ENST00000559844 BLOC1S2Q6QNY1 142 aa21.17■□□□□ 0.98
SNX1-208ENST00000559844 ZNF512BQ96KM6 892 aaPredicted RBP21.17■□□□□ 0.98
SNX1-208ENST00000559844 PPIP5K2O43314 1243 aa21.16■□□□□ 0.98
SNX1-208ENST00000559844 BRD1O95696 1058 aa21.16■□□□□ 0.98
SNX1-208ENST00000559844 ZFYP08048 801 aaPredicted RBP21.16■□□□□ 0.98
SNX1-208ENST00000559844 CAVIN4Q5BKX8 364 aa21.16■□□□□ 0.98
SNX1-208ENST00000559844 C15orf52Q6ZUT6 534 aaKnown RBP21.16■□□□□ 0.98
SNX1-208ENST00000559844 DSCC1Q9BVC3 393 aa21.16■□□□□ 0.98
SNX1-208ENST00000559844 ZDHHC9Q9Y397 364 aa21.16■□□□□ 0.98
SNX1-208ENST00000559844 VPS37DQ86XT2 251 aa21.16■□□□□ 0.98
SNX1-208ENST00000559844 SEC62Q99442 399 aaKnown RBP21.16■□□□□ 0.98
SNX1-208ENST00000559844 CPA1P15085 419 aa21.15■□□□□ 0.98
SNX1-208ENST00000559844 IARSP41252 1262 aaKnown RBP21.15■□□□□ 0.98
SNX1-208ENST00000559844 BCAMP50895 628 aa21.15■□□□□ 0.98
SNX1-208ENST00000559844 KIAA2012Q0VF49 1180 aa21.15■□□□□ 0.98
SNX1-208ENST00000559844 FAM84BQ96KN1 310 aaPredicted RBP21.15■□□□□ 0.98
SNX1-208ENST00000559844 DICER1Q9UPY3 1922 aaKnown RBP21.15■□□□□ 0.98
SNX1-208ENST00000559844 GRIN3BO60391 1043 aa21.14■□□□□ 0.98
SNX1-208ENST00000559844 RPS6KB1P23443 525 aa21.14■□□□□ 0.98
SNX1-208ENST00000559844 CCDC129Q6ZRS4 1044 aa21.14■□□□□ 0.98
SNX1-208ENST00000559844 HIBADHP31937 336 aaKnown RBP21.14■□□□□ 0.97
SNX1-208ENST00000559844 CCDC102BQ68D86 513 aa21.14■□□□□ 0.97
SNX1-208ENST00000559844 ZNF804AQ7Z570 1209 aa21.14■□□□□ 0.97
SNX1-208ENST00000559844 LARGE2Q8N3Y3 721 aa21.14■□□□□ 0.97
SNX1-208ENST00000559844 COL4A5P29400 1685 aa21.13■□□□□ 0.97
SNX1-208ENST00000559844 G3V3G9 751 aa21.13■□□□□ 0.97
SNX1-208ENST00000559844 PHKA1P46020 1223 aa21.13■□□□□ 0.97
SNX1-208ENST00000559844 DCAF8Q5TAQ9 597 aa21.13■□□□□ 0.97
SNX1-208ENST00000559844 VPS33BQ9H267 617 aa21.13■□□□□ 0.97
SNX1-208ENST00000559844 DOK7Q18PE1 504 aa21.12■□□□□ 0.97
SNX1-208ENST00000559844 MCTP1Q6DN14 999 aa21.12■□□□□ 0.97
SNX1-208ENST00000559844 FBXO33Q7Z6M2 555 aa21.12■□□□□ 0.97
SNX1-208ENST00000559844 DBNDD1Q9H9R9 158 aa21.12■□□□□ 0.97
SNX1-208ENST00000559844 WDR33Q9C0J8 1336 aaKnown RBP21.12■□□□□ 0.97
SNX1-208ENST00000559844 UQCRFS1P1P0C7P4 283 aa21.12■□□□□ 0.97
SNX1-208ENST00000559844 PRELPP51888 382 aa21.12■□□□□ 0.97
SNX1-208ENST00000559844 TTF1Q15361 905 aaPredicted RBP21.12■□□□□ 0.97
SNX1-208ENST00000559844 IQSEC3Q9UPP2 1182 aaPredicted RBP21.12■□□□□ 0.97
SNX1-208ENST00000559844 SMC3Q9UQE7 1217 aa21.12■□□□□ 0.97
SNX1-208ENST00000559844 CHGBP05060 677 aa21.11■□□□□ 0.97
SNX1-208ENST00000559844 ZSCAN25Q6NSZ9 544 aa21.11■□□□□ 0.97
SNX1-208ENST00000559844 NEK1Q96PY6 1258 aa21.11■□□□□ 0.97
SNX1-208ENST00000559844 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.11■□□□□ 0.972e-6■■□□□ 13.8
SNX1-208ENST00000559844 COA1Q9GZY4 146 aa21.11■□□□□ 0.97
SNX1-208ENST00000559844 AKAP11Q9UKA4 1901 aa21.11■□□□□ 0.97
SNX1-208ENST00000559844 SCN9AQ15858 1988 aa21.11■□□□□ 0.97
SNX1-208ENST00000559844 MAST3O60307 1309 aa21.11■□□□□ 0.97
SNX1-208ENST00000559844 ZAP70P43403 619 aa21.1■□□□□ 0.97
SNX1-208ENST00000559844 L1TD1Q5T7N2 865 aaKnown RBP21.1■□□□□ 0.97
SNX1-208ENST00000559844 CD209Q9NNX6 404 aa21.1■□□□□ 0.97
SNX1-208ENST00000559844 GNL3LQ9NVN8 582 aaKnown RBP21.1■□□□□ 0.97
SNX1-208ENST00000559844 DCAF8L1A6NGE4 600 aa21.1■□□□□ 0.97
SNX1-208ENST00000559844 HMGB1P09429 215 aaKnown RBP21.1■□□□□ 0.97
SNX1-208ENST00000559844 LMNB1P20700 586 aa21.1■□□□□ 0.97
SNX1-208ENST00000559844 ECE2O60344 883 aa21.09■□□□□ 0.97
SNX1-208ENST00000559844 SCARF1Q14162 830 aa21.09■□□□□ 0.97
SNX1-208ENST00000559844 NIM1KQ8IY84 436 aa21.09■□□□□ 0.97
SNX1-208ENST00000559844 JDP2Q8WYK2 163 aa21.09■□□□□ 0.97
SNX1-208ENST00000559844 TIAM2Q8IVF5 1701 aa21.09■□□□□ 0.97
SNX1-208ENST00000559844 LARGE1O95461 756 aa21.08■□□□□ 0.97
SNX1-208ENST00000559844 CYP21A2P08686 494 aa21.08■□□□□ 0.97
SNX1-208ENST00000559844 ARID4AP29374 1257 aaPredicted RBP21.08■□□□□ 0.97
SNX1-208ENST00000559844 KLHL40Q2TBA0 621 aa21.08■□□□□ 0.97
SNX1-208ENST00000559844 APPBP2Q92624 585 aa21.08■□□□□ 0.97
SNX1-208ENST00000559844 GZF1Q9H116 711 aaPredicted RBP21.08■□□□□ 0.97
SNX1-208ENST00000559844 HSPD1P10809 573 aaKnown RBP21.08■□□□□ 0.96
SNX1-208ENST00000559844 PDIA4P13667 645 aaKnown RBP21.08■□□□□ 0.96
SNX1-208ENST00000559844 IL1R1P14778 569 aa21.08■□□□□ 0.96
SNX1-208ENST00000559844 MCAMP43121 646 aa21.08■□□□□ 0.96
SNX1-208ENST00000559844 CCDC83Q8IWF9 413 aa21.08■□□□□ 0.96
SNX1-208ENST00000559844 LARP6Q9BRS8 491 aaKnown RBP21.08■□□□□ 0.96
SNX1-208ENST00000559844 PSME4Q14997 1843 aa21.08■□□□□ 0.96
SNX1-208ENST00000559844 RASGRF1Q13972 1273 aa21.07■□□□□ 0.96
SNX1-208ENST00000559844 ME3Q16798 604 aa21.07■□□□□ 0.96
SNX1-208ENST00000559844 TDRD7Q8NHU6 1098 aaKnown RBP21.07■□□□□ 0.96
SNX1-208ENST00000559844 LMBRD1Q9NUN5 540 aa21.07■□□□□ 0.96
SNX1-208ENST00000559844 TPCN1Q9ULQ1 816 aa21.07■□□□□ 0.96
SNX1-208ENST00000559844 ISY1Q9ULR0 285 aaKnown RBP21.07■□□□□ 0.96
SNX1-208ENST00000559844 TAF6LQ9Y6J9 622 aa21.07■□□□□ 0.96
SNX1-208ENST00000559844 M0R2C6 588 aa21.06■□□□□ 0.96
SNX1-208ENST00000559844 PODNQ7Z5L7 613 aa21.06■□□□□ 0.96
SNX1-208ENST00000559844 OSBP2Q969R2 916 aa21.06■□□□□ 0.96
SNX1-208ENST00000559844 RNF181Q9P0P0 153 aa21.06■□□□□ 0.96
SNX1-208ENST00000559844 CTNNA3Q9UI47 895 aa21.06■□□□□ 0.96
SNX1-208ENST00000559844 DDX49Q9Y6V7 483 aaKnown RBP21.06■□□□□ 0.96
SNX1-208ENST00000559844 COL1A1P02452 1464 aaPredicted RBP21.06■□□□□ 0.96
SNX1-208ENST00000559844 ZNRF3Q9ULT6 936 aa21.06■□□□□ 0.96
SNX1-208ENST00000559844 GOLGA6L3A6NEY3 463 aa21.05■□□□□ 0.96
SNX1-208ENST00000559844 YDJCA8MPS7 323 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms