RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GRIA4P48058 902 aa9.26□□□□□ -0.93
VPS13C-208ENST00000559119 SERPINB4P48594 390 aa9.26□□□□□ -0.93
VPS13C-208ENST00000559119 SOX4Q06945 474 aaPredicted RBP9.26□□□□□ -0.93
VPS13C-208ENST00000559119 SPRED3Q2MJR0 410 aa9.26□□□□□ -0.93
VPS13C-208ENST00000559119 FBLIM1Q8WUP2 373 aa9.26□□□□□ -0.93
VPS13C-208ENST00000559119 ADAMTS4O75173 837 aa9.25□□□□□ -0.93
VPS13C-208ENST00000559119 PDE3BQ13370 1112 aa9.25□□□□□ -0.93
VPS13C-208ENST00000559119 ZNF423Q2M1K9 1284 aa9.25□□□□□ -0.93
VPS13C-208ENST00000559119 HP1BP3Q5SSJ5 553 aaPredicted RBP9.25□□□□□ -0.93
VPS13C-208ENST00000559119 CDPF1Q6NVV7 123 aa9.25□□□□□ -0.93
VPS13C-208ENST00000559119 DDX54Q8TDD1 881 aaKnown RBP9.25□□□□□ -0.93
VPS13C-208ENST00000559119 TCF12Q99081 682 aa9.25□□□□□ -0.93
VPS13C-208ENST00000559119 ZFYVE1Q9HBF4 777 aa9.25□□□□□ -0.93
VPS13C-208ENST00000559119 F13BP05160 661 aa9.24□□□□□ -0.93
VPS13C-208ENST00000559119 MAOBP27338 520 aa9.24□□□□□ -0.93
VPS13C-208ENST00000559119 POU4F3Q15319 338 aa9.24□□□□□ -0.93
VPS13C-208ENST00000559119 USPL1Q5W0Q7 1092 aa9.24□□□□□ -0.93
VPS13C-208ENST00000559119 C2CD4AQ8NCU7 369 aaPredicted RBP9.24□□□□□ -0.93
VPS13C-208ENST00000559119 NRSN2Q9GZP1 204 aa9.24□□□□□ -0.93
VPS13C-208ENST00000559119 HOXA10P31260 410 aaPredicted RBP9.23□□□□□ -0.93
VPS13C-208ENST00000559119 CPSF6Q16630 551 aaKnown RBP eCLIP9.23□□□□□ -0.93
VPS13C-208ENST00000559119 KIAA0319Q5VV43 1072 aa9.23□□□□□ -0.93
VPS13C-208ENST00000559119 EHD4Q9H223 541 aa9.23□□□□□ -0.93
VPS13C-208ENST00000559119 RAD18Q9NS91 495 aa9.23□□□□□ -0.93
VPS13C-208ENST00000559119 CPNE3O75131 537 aaKnown RBP9.22□□□□□ -0.93
VPS13C-208ENST00000559119 ADH5P11766 374 aa9.22□□□□□ -0.93
VPS13C-208ENST00000559119 CORO1BQ9BR76 489 aa9.22□□□□□ -0.93
VPS13C-208ENST00000559119 METTL22Q9BUU2 404 aaPredicted RBP9.22□□□□□ -0.93
VPS13C-208ENST00000559119 FOSL1P15407 271 aa9.21□□□□□ -0.94
VPS13C-208ENST00000559119 TAL1P17542 331 aaPredicted RBP9.21□□□□□ -0.94
VPS13C-208ENST00000559119 ARHGAP4P98171 946 aa9.21□□□□□ -0.94
VPS13C-208ENST00000559119 ECM1Q16610 540 aa9.21□□□□□ -0.94
VPS13C-208ENST00000559119 AKAP4Q5JQC9 854 aa9.21□□□□□ -0.94
VPS13C-208ENST00000559119 TMC1Q8TDI8 760 aa9.21□□□□□ -0.94
VPS13C-208ENST00000559119 TBC1D32Q96NH3 1257 aa9.21□□□□□ -0.94
VPS13C-208ENST00000559119 ANGEL1Q9UNK9 670 aaKnown RBP9.21□□□□□ -0.94
VPS13C-208ENST00000559119 ORC1Q13415 861 aa9.2□□□□□ -0.94
VPS13C-208ENST00000559119 DYMQ7RTS9 669 aa9.2□□□□□ -0.94
VPS13C-208ENST00000559119 EZH1Q92800 747 aaPredicted RBP9.2□□□□□ -0.94
VPS13C-208ENST00000559119 CITED4Q96RK1 184 aa9.2□□□□□ -0.94
VPS13C-208ENST00000559119 KRTAP4-12Q9BQ66 201 aa9.2□□□□□ -0.94
VPS13C-208ENST00000559119 NPHS2Q9NP85 383 aa9.2□□□□□ -0.94
VPS13C-208ENST00000559119 PRKAG2Q9UGJ0 569 aa9.2□□□□□ -0.94
VPS13C-208ENST00000559119 ACTL7BQ9Y614 415 aa9.2□□□□□ -0.94
VPS13C-208ENST00000559119 B3GALT4O96024 378 aa9.19□□□□□ -0.94
VPS13C-208ENST00000559119 CTSBP07858 339 aa9.19□□□□□ -0.94
VPS13C-208ENST00000559119 RAB6AP20340 208 aa9.19□□□□□ -0.94
VPS13C-208ENST00000559119 MAP7Q14244 749 aa9.19□□□□□ -0.94
VPS13C-208ENST00000559119 FAM129BQ96TA1 746 aa9.19□□□□□ -0.94
VPS13C-208ENST00000559119 ZNF576Q9H609 170 aa9.19□□□□□ -0.94
VPS13C-208ENST00000559119 ITPKAP23677 461 aa9.18□□□□□ -0.94
VPS13C-208ENST00000559119 ZAR1Q86SH2 424 aa9.18□□□□□ -0.94
VPS13C-208ENST00000559119 SHISA5Q8N114 240 aa9.18□□□□□ -0.94
VPS13C-208ENST00000559119 TRIM56Q9BRZ2 755 aaKnown RBP9.18□□□□□ -0.94
VPS13C-208ENST00000559119 AP4E1Q9UPM8 1137 aa9.18□□□□□ -0.94
VPS13C-208ENST00000559119 CYP26A1O43174 497 aa9.17□□□□□ -0.94
VPS13C-208ENST00000559119 NFICP08651 508 aa9.17□□□□□ -0.94
VPS13C-208ENST00000559119 ADMP35318 185 aa9.17□□□□□ -0.94
VPS13C-208ENST00000559119 TXKP42681 527 aa9.17□□□□□ -0.94
VPS13C-208ENST00000559119 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.16□□□□□ -0.94
VPS13C-208ENST00000559119 GADD45BO75293 160 aaPredicted RBP9.16□□□□□ -0.94
VPS13C-208ENST00000559119 ASPAP45381 313 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 PDE3AQ14432 1141 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 MSMPQ1L6U9 139 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 KRTAP1-3Q8IUG1 177 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 CCDC74AQ96AQ1 378 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 ARID3AQ99856 593 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 NIF3L1Q9GZT8 377 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 DNAJC25Q9H1X3 360 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 GOLGA2P5Q9HBQ8 144 aa9.16□□□□□ -0.94
VPS13C-208ENST00000559119 EIF1AYO14602 144 aaKnown RBP9.15□□□□□ -0.94
VPS13C-208ENST00000559119 ECEL1O95672 775 aa9.15□□□□□ -0.94
VPS13C-208ENST00000559119 PTPN12Q05209 780 aaKnown RBP9.15□□□□□ -0.94
VPS13C-208ENST00000559119 AP3B2Q13367 1082 aa9.15□□□□□ -0.94
VPS13C-208ENST00000559119 LCE3BQ5TA77 95 aa9.15□□□□□ -0.94
VPS13C-208ENST00000559119 DUSP27Q5VZP5 1158 aa9.15□□□□□ -0.94
VPS13C-208ENST00000559119 SEMA6CQ9H3T2 930 aa9.15□□□□□ -0.94
VPS13C-208ENST00000559119 FAM105AQ9NUU6 356 aa9.15□□□□□ -0.94
VPS13C-208ENST00000559119 FAM170BA6NMN3 283 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 AOC2O75106 756 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 CYP27A1Q02318 531 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 PDE4CQ08493 712 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 TXNDC2Q86VQ3 553 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 ACSS3Q9H6R3 686 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 CCDC39Q9UFE4 941 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 TRAK1Q9UPV9 953 aa9.14□□□□□ -0.95
VPS13C-208ENST00000559119 PRPF40BQ6NWY9 871 aaKnown RBP9.13□□□□□ -0.95
VPS13C-208ENST00000559119 VSIG10LQ86VR7 867 aa9.13□□□□□ -0.95
VPS13C-208ENST00000559119 CCER1Q8TC90 406 aaPredicted RBP9.13□□□□□ -0.95
VPS13C-208ENST00000559119 FMNL2Q96PY5 1086 aa9.13□□□□□ -0.95
VPS13C-208ENST00000559119 ABCB6Q9NP58 842 aa9.13□□□□□ -0.95
VPS13C-208ENST00000559119 ADGRE2Q9UHX3 823 aa9.13□□□□□ -0.95
VPS13C-208ENST00000559119 RNF114Q9Y508 228 aa9.13□□□□□ -0.95
VPS13C-208ENST00000559119 TMEM238LA0A1B0GVL6 79 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 GPR182O15218 404 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 PRNPP04156 253 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 RPS26P11Q5JNZ5 115 aaPredicted RBP9.12□□□□□ -0.95
VPS13C-208ENST00000559119 ABI1Q8IZP0 508 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 GATA6Q92908 595 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 DMRTB1Q96MA1 342 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms