RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CASZ1Q86V15 1759 aa14.91□□□□□ -0.02
SHMT2-229ENST00000557348 PATL2C9JE40 543 aaKnown RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 ZNF500O60304 480 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 SERPINB2P05120 415 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 GJB2P29033 226 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 HIBADHP31937 336 aaKnown RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 C15orf52Q6ZUT6 534 aaKnown RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 GTF3C6Q969F1 213 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 ZNF274Q96GC6 653 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 FAM84BQ96KN1 310 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 STRBPQ96SI9 672 aaKnown RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 RGPD3A6NKT7 1758 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 RGPD4Q7Z3J3 1758 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 ZSCAN22P10073 491 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 HMGN5P82970 282 aaKnown RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 SPTY2D1Q68D10 685 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-229ENST00000557348 STOX1Q6ZVD7 989 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 SMIM5Q71RC9 77 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 CNNM2Q9H8M5 875 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 TAF6LQ9Y6J9 622 aa14.9□□□□□ -0.02
SHMT2-229ENST00000557348 DUOX1Q9NRD9 1551 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 FOXP2O15409 715 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 DHX16O60231 1041 aaKnown RBP14.89□□□□□ -0.03
SHMT2-229ENST00000557348 PFKFB2O60825 505 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 BBOX1O75936 387 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 LARGE1O95461 756 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 APPP05067 770 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 EVCP57679 992 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 PKP1Q13835 747 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 SLFNL1Q499Z3 407 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 MCTP1Q6DN14 999 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 CRAMP1Q96RY5 1269 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 TFCP2L1Q9NZI6 479 aa14.89□□□□□ -0.03
SHMT2-229ENST00000557348 EP400Q96L91 3159 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 KLRG2A4D1S0 409 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-229ENST00000557348 MBD4O95243 580 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 MBD3O95983 291 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 APBA3O96018 575 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 SYT1P21579 422 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 HOXA10P31260 410 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-229ENST00000557348 GYG1P46976 350 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 NASPP49321 788 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-229ENST00000557348 BRF1Q92994 677 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 MTA3Q9BTC8 594 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 NAPBQ9H115 298 aa14.88□□□□□ -0.03
SHMT2-229ENST00000557348 GZF1Q9H116 711 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-229ENST00000557348 TNRC6CQ9HCJ0 1690 aaKnown RBP14.88□□□□□ -0.03
SHMT2-229ENST00000557348 SNAP23O00161 211 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 ZNF804AQ7Z570 1209 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 CCDC125Q86Z20 511 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 AKT1S1Q96B36 256 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 RNF41Q9H4P4 317 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-229ENST00000557348 RAI14Q9P0K7 980 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 ANKIB1Q9P2G1 1089 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 SALL1Q9NSC2 1324 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 POLRMTO00411 1230 aaKnown RBP14.87□□□□□ -0.03
SHMT2-229ENST00000557348 F13A1P00488 732 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 NCLP19338 710 aaKnown RBP14.87□□□□□ -0.03
SHMT2-229ENST00000557348 CYP7A1P22680 504 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 ATP2B4P23634 1241 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 NT5C2P49902 561 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 TTLL5Q6EMB2 1281 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 GIMAP6Q6P9H5 292 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 CERS3Q8IU89 383 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 MB21D2Q8IYB1 491 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-229ENST00000557348 TMEM87BQ96K49 555 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 KRT23Q9C075 422 aa14.87□□□□□ -0.03
SHMT2-229ENST00000557348 DDX49Q9Y6V7 483 aaKnown RBP14.87□□□□□ -0.03
SHMT2-229ENST00000557348 COL4A1P02462 1669 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 PCP11498 1178 aaKnown RBP14.86□□□□□ -0.03
SHMT2-229ENST00000557348 LARP1BQ659C4 914 aaKnown RBP14.86□□□□□ -0.03
SHMT2-229ENST00000557348 IFNL3Q8IZI9 196 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 PROM2Q8N271 834 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 RGS22Q8NE09 1264 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 WDR66Q8TBY9 1149 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 TCEANC2Q96MN5 208 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 LMBRD1Q9NUN5 540 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 ABCF2Q9UG63 623 aa14.86□□□□□ -0.03
SHMT2-229ENST00000557348 NOL7Q9UMY1 257 aaKnown RBP14.86□□□□□ -0.03
SHMT2-229ENST00000557348 LAMA4Q16363 1823 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 MAGEB6P1A0A0J9YX57 407 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 DYNC1I1O14576 645 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 PRC1O43663 620 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 ST3GAL1Q11201 340 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 SF3B2Q13435 895 aaKnown RBP14.85□□□□□ -0.03
SHMT2-229ENST00000557348 NAA16Q6N069 864 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-229ENST00000557348 NECAB1Q8N987 351 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 TMEM87AQ8NBN3 555 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 PDLIM2Q96JY6 352 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 LARP6Q9BRS8 491 aaKnown RBP14.85□□□□□ -0.03
SHMT2-229ENST00000557348 SLC4A4Q9Y6R1 1079 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 TIAM2Q8IVF5 1701 aa14.85□□□□□ -0.03
SHMT2-229ENST00000557348 TDO2P48775 406 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 BRIP1Q9BX63 1249 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 PODXL2Q9NZ53 605 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 COL1A1P02452 1464 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-229ENST00000557348 GSG1L2A8MUP6 293 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 HAND2P61296 217 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 GSTO1P78417 241 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 SART3Q15020 963 aaKnown RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms