RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 CAPN7Q9Y6W3 813 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 CDC25BP30305 580 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 CEP85LQ5SZL2 805 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 ERMNQ8TAM6 284 aa19.72■□□□□ 0.75
SYNE3-204ENST00000555759 SECISBP2LQ93073 1101 aaKnown RBP19.72■□□□□ 0.75
SYNE3-204ENST00000555759 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.72■□□□□ 0.75
SYNE3-204ENST00000555759 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.71■□□□□ 0.75
SYNE3-204ENST00000555759 KCNH3Q9ULD8 1083 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 CUTAO60888 179 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 KRT2P35908 639 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 CCDC110Q8TBZ0 833 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 DZIP1Q86YF9 867 aaKnown RBP19.71■□□□□ 0.75
SYNE3-204ENST00000555759 THEMISQ8N1K5 641 aaPredicted RBP19.71■□□□□ 0.75
SYNE3-204ENST00000555759 TM6SF1Q9BZW5 370 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 RTL9Q8NET4 1388 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 TSPY2A6NKD2 308 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 CIB2O75838 187 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 EFCAB13Q8IY85 973 aa19.71■□□□□ 0.75
SYNE3-204ENST00000555759 ACTN4O43707 911 aaKnown RBP19.7■□□□□ 0.74
SYNE3-204ENST00000555759 MPRIPQ6WCQ1 1025 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 PAG1Q9NWQ8 432 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 NOL3O60936 208 aaKnown RBP19.7■□□□□ 0.74
SYNE3-204ENST00000555759 IL15P40933 162 aaPredicted RBP19.7■□□□□ 0.74
SYNE3-204ENST00000555759 ANTXR1Q9H6X2 564 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 RRP15Q9Y3B9 282 aaKnown RBP19.7■□□□□ 0.74
SYNE3-204ENST00000555759 KIF24Q5T7B8 1368 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 CCDC38Q502W7 563 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 TSPYL6Q8N831 410 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 RNF113AO15541 343 aaKnown RBP19.7■□□□□ 0.74
SYNE3-204ENST00000555759 VWA3BQ502W6 1294 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 KSR2Q6VAB6 950 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 FERMT1Q9BQL6 677 aa19.7■□□□□ 0.74
SYNE3-204ENST00000555759 XPO4Q9C0E2 1151 aaKnown RBP19.7■□□□□ 0.74
SYNE3-204ENST00000555759 SND1Q7KZF4 910 aaKnown RBP eCLIP19.69■□□□□ 0.74
SYNE3-204ENST00000555759 PNMA8AQ86V59 439 aaPredicted RBP19.69■□□□□ 0.74
SYNE3-204ENST00000555759 RABGGTAQ92696 567 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 CC2D2AQ9P2K1 1620 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 SMIM23A6NLE4 172 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 ZNF202O95125 648 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 IFIT1BQ5T764 474 aaKnown RBP19.69■□□□□ 0.74
SYNE3-204ENST00000555759 LDHAL6AQ6ZMR3 332 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 SYCP3Q8IZU3 236 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 ZBTB9Q96C00 473 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 ZFYVE9O95405 1425 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 LRCH2Q5VUJ6 765 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 TAOK1Q7L7X3 1001 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 FCHSD1Q86WN1 690 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 SLC27A2O14975 620 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 USP37Q86T82 979 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 MIPOL1Q8TD10 442 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 NOX5Q96PH1 765 aa19.69■□□□□ 0.74
SYNE3-204ENST00000555759 SYNRGQ9UMZ2 1314 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 GCKP35557 465 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 MSH6P52701 1360 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 CCT6AP40227 531 aaKnown RBP19.68■□□□□ 0.74
SYNE3-204ENST00000555759 HELLSQ9NRZ9 838 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 PPP4R3AQ6IN85 833 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 GNGT1P63211 74 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 TBC1D8BQ0IIM8 1120 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 NEDD9Q14511 834 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 PLCB1Q9NQ66 1216 aa19.68■□□□□ 0.74
SYNE3-204ENST00000555759 CPA1P15085 419 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 IQCDQ96DY2 449 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 E7EVH7 732 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 AP1ARQ63HQ0 302 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 CHPF2Q9P2E5 772 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 PYCARDQ9ULZ3 195 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 UTP11Q9Y3A2 253 aaKnown RBP19.67■□□□□ 0.74
SYNE3-204ENST00000555759 LRMPQ12912 555 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 NFE2L3Q9Y4A8 694 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 UHRF1BP1Q6BDS2 1440 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 FYB2Q5VWT5 728 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 CAPS2Q9BXY5 557 aa19.67■□□□□ 0.74
SYNE3-204ENST00000555759 SF3B2Q13435 895 aaKnown RBP19.66■□□□□ 0.74
SYNE3-204ENST00000555759 MTX1Q13505 466 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 ANKRD13DQ6ZTN6 518 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 RPAINQ86UA6 219 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 ZSCAN29Q8IWY8 852 aaPredicted RBP19.66■□□□□ 0.74
SYNE3-204ENST00000555759 BAIAP2L1Q9UHR4 511 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 WWC3Q9ULE0 1092 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 ZNF652Q9Y2D9 606 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 TCOF1Q13428 1488 aaKnown RBP19.66■□□□□ 0.74
SYNE3-204ENST00000555759 AEBP2Q6ZN18 517 aaPredicted RBP19.66■□□□□ 0.74
SYNE3-204ENST00000555759 SLF2Q8IX21 1173 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 ARHGAP24Q8N264 748 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 LINS1Q8NG48 757 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 CTNND2Q9UQB3 1225 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 ARID5AQ03989 594 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 FAM69CQ0P6D2 419 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 PPP1R7Q15435 360 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 CLUL1Q15846 466 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 CFAP221Q4G0U5 840 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 CCDC174Q6PII3 467 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 VCX3BQ9H321 246 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 SAR1BQ9Y6B6 198 aa19.66■□□□□ 0.74
SYNE3-204ENST00000555759 MPHOSPH10O00566 681 aaKnown RBP19.65■□□□□ 0.74
SYNE3-204ENST00000555759 ATP2A2P16615 1042 aaKnown RBP19.65■□□□□ 0.74
SYNE3-204ENST00000555759 CDC37L1Q7L3B6 337 aa19.65■□□□□ 0.74
SYNE3-204ENST00000555759 OTUD7AQ8TE49 926 aaPredicted RBP19.65■□□□□ 0.74
SYNE3-204ENST00000555759 TRMT112Q9UI30 125 aaKnown RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms